Difference between revisions of "Discussion on examples for ProteinIdentifier.identifier"
| (3 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
Return to [[BRIDG]] | Return to [[BRIDG]] | ||
| − | ===Need Examples for ProteinIdentifier.identifier=== | + | ===CLOSED - Need Examples for ProteinIdentifier.identifier=== |
| − | ====Current Definition | + | ====Current Definition==== |
DEFINITION: A unique symbol that establishes the identity of the protein. | DEFINITION: A unique symbol that establishes the identity of the protein. | ||
| Line 29: | Line 29: | ||
====Outstanding Question==== | ====Outstanding Question==== | ||
| − | CG SMEs: Can someone please provide valid examples from real database? | + | '''CG SMEs:''' Can someone please provide valid examples from real database? |
====Responses==== | ====Responses==== | ||
| − | + | Lauren Becnel: Examples include UniProtKB and Refseq protein identifiers. | |
| + | |||
| + | Q from Wendy: These are the names of identifier databases rather than actual identifier values from those databases which is what Mollie was proposing we add. Still need actual real-world example values. | ||
| + | |||
| + | Discussion 20160223: Lauren will provide example values | ||
| + | |||
| + | Lauren Becnel, 20160226: The first 10 amino acids of the protein BRCA1 are MDLSALRVEE. | ||
| + | |||
| + | UPDATE DONE IN THE MODEL | ||
Return to [[BRIDG]] | Return to [[BRIDG]] | ||
Latest revision as of 17:44, 29 February 2016
Return to BRIDG
CLOSED - Need Examples for ProteinIdentifier.identifier
Current Definition
DEFINITION: A unique symbol that establishes the identity of the protein.
EXAMPLE(S): The identifier from the Ensembl or GenBank database
OTHER NAME(S):
NOTE(S): The identifier needs to be fully qualified with version and source, if available as part of the standard.�
It is anticipated that at some point in the future a use case will arise for a type code to be added to the identifiers allowing a single database to issue more than one kind of identifier, but it is also hoped that this need may be addressed by a change in the HL7 data type definition for II. The current pattern of pairing an II attribute with a CD attribute does not support the anticipated use case.
Comment
provide examples of code
Proposed Disposition
Persuasive
Proposed Disposition Comment
Valid request but need SMEs to provide valid example value(s).
Initial Discussion
Examples were supposedly provided in email but couldn't be located.
Outstanding Question
CG SMEs: Can someone please provide valid examples from real database?
Responses
Lauren Becnel: Examples include UniProtKB and Refseq protein identifiers.
Q from Wendy: These are the names of identifier databases rather than actual identifier values from those databases which is what Mollie was proposing we add. Still need actual real-world example values.
Discussion 20160223: Lauren will provide example values
Lauren Becnel, 20160226: The first 10 amino acids of the protein BRCA1 are MDLSALRVEE.
UPDATE DONE IN THE MODEL
Return to BRIDG
