Difference between revisions of "Specimen"

Revision as of 20:12, 7 July 2014

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Scope of Specimen Project

The scope of the project is to:

Complete DAM incorporating various use cases (OO, CG, II, AP)
Complete Specimen V3 models based on other use cases (CG, II, AP)
Consider V2 Updates
Support Specimen Identifier formats as further established by AP workgroup

Leadership

Topic leads:

Review/refine DAM – Joyce Hernandez, Mukesh Sharma
Starting point: NCI Life Sciences DAM: Specimen Core.
V3 CMET/RMIM compare + updates – Lorraine Constable
V2 SPM compare + updates – Riki Merrick, Hans Buitendijk
Validate Specimen Identifier format support - TBD

Conference Calls and Minutes

Dates: Every other Thursday, starting Feb 16, 2012
- Time: 12:00 - 13:00 EST
Phone: +1 770-657-9270
- Passcode: 653212
Webex: http://www.mymeetings.com/siemens/nc/join.php?i=741301183&p=&t=c
- Passcode: HL7OO
List Serve: specimen@hl7.lists.org

Minutes

Working Documents

Use Cases

Clinical Sequencing Project - Identified Use Cases to Consider in Specimen CMET - from CG ClinSeq.doc
Specimen Use Case for Isolate Representation
Specimen Use Case for Environmental Specimen
Medical Research Use Case and Specimen Core Diagram Media:Specimen-Core Model Diagram and Medical Research Use Case Process Flow.xls
Origin of Specimen
- Need to indicate whether the specimen is human, animal, soil, etc.
- For viral genetics where DNA/RNA can be extracted from a micro-organism.
Notes from May WGM
- II perspective mainly interested in specimen in context of interventional imaging
- An introduction to the DICOM specimen information model is available in DICOM Part 17 (available free at ftp://medical.nema.org/medical/dicom/2011/11_17pu.pdf) Annex NN.
- Detailed specimen information can be found in DICOM Part 3 (available free at ftp://medical.nema.org/medical/dicom/2011/11_03pu.pdf). This information that has been specified by DICOM WG26 "Pathology" (DICOM Supplement 122 "Specimen Identification and Revised Pathology" Project) should be taken into consideration in the project.

Status & Deliverables

Draft Model

Specimen Model in Gforge: http://gforge.hl7.org/gf/project/orders/scmsvn/?action=browse&path=%2Ftrunk%2FPOSP%2FDAM%2F

Definitions spreadsheet: File:Specimen DAM classes and attributes with notes.xlsx

snapshot of Draft Model work in progress (draft model on the left, excerpts from NCI LSDAM on the right):

Links

LS DAM Wiki: https://wiki.nci.nih.gov/x/cxRlAQ

LS DAM Overview: https://wiki.nci.nih.gov/download/attachments/76677702/LSDAMSpecimenHL7OO.pptx

LS DAM (Enterprise Architect) : https://wiki.nci.nih.gov/download/attachments/23401587/LSDAMWorking.EAP

LS DAM (HTML): http://ncientarch.info/sandbox/LSDAM2_2_2/EARoot/EA3/EA1/EA1/EA1/EA1/EA1/EA4/EA157.htm

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 *[[File:SPM_Minutes_20140109_ConCall.docx|Minutes 20140109 ConfCall]]
 *[[File:SPM_Minutes_20140130_ConCall.docx|Minutes 20140130 ConfCall]]
+*[[File:SPM_Minutes_20140213_ConCall_v2.docx|Minutes 20140213 ConfCall]]
+*[[File:SPM_Minutes_20140227_ConCall.docx|Minutes 20140227 ConfCall]]
+*[[File:SPM_Minutes_20140306_ConCall.docx|Minutes 20140306 ConfCall]]
+*[[File:SPM_Minutes_20140313_ConCall.docx|Minutes 20140313 ConfCall]]
+*[[File:SPM_Minutes_20140320_ConCall.docx|Minutes 20140320 ConfCall]]
+*[[File:SPM_Minutes_20140327_ConCall.docx|Minutes 20140327 ConfCall]]
+*[[File:SPM_Minutes_20140605_ConCall.docx|Minutes 20140605 ConfCall]]
+*[[File:SPM_Minutes_20140619_ConCall.docx|Minutes 20140619 ConfCall]]
 ==Working Documents==

Difference between revisions of "Specimen"

Revision as of 20:12, 7 July 2014

Contents

Scope of Specimen Project

Leadership

Conference Calls and Minutes

Minutes

Working Documents

Use Cases

Status & Deliverables

Draft Model

Links

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