Difference between revisions of "Specimen"

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==Scope of Specimen Project==
 
==Scope of Specimen Project==
 
The scope of the project is to:
 
The scope of the project is to:
*Complete DAM incorporating various use cases (OO, CG, II, AP) - see publication:  
+
*Complete DAM incorporating various use cases (OO, CG, II, AP and Harmonize with BRIDG Model (biologic specimen) and Address issues encountered by IHE AP when applying the Specimen DAM to CDA during development of Anatomic Pathology Structured Report (APSR)) - see publication: ADD LINK TO LATEST VERSION HERE!!!
 +
*Update the FHIR resource specimen per latest DAM publication / and gForge trackers = http://build.fhir.org/specimen.html
 
*Complete Specimen V3 models based on other use cases (CG, II, AP)
 
*Complete Specimen V3 models based on other use cases (CG, II, AP)
 
*Consider V2 Updates
 
*Consider V2 Updates
 
*Support Specimen Identifier formats as further established by AP workgroup
 
*Support Specimen Identifier formats as further established by AP workgroup
* Harmonize with BRIDG Model (biologic specimen)
 
* Address issues encountered by IHE AP when applying the Specimen DAM to CDA during development of Anatomic Pathology Structured Report (APSR)
 
  
 
==Leadership==
 
==Leadership==
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==Conference Call Information==
 
==Conference Call Information==
*Dates: '''Every WEDNESDAY starting 11/02/2016'''
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*Date: Tuesday - starting July 10, 2018
**Time: 12:00 PM - 1:00 PM ET
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**Time: 3 - 4 PM EDT
*Phone: +1 770-657-9270
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Online Meeting Link: https://join.freeconferencecall.com/ord
**Passcode: 398652#   
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Online Meeting ID: ord
*Webex: https://join.me/vernetzt.us
+
 +
If not on FCC or not wanting to use VOIP, use the following dial-in:
 +
Dial-in Number (United States): (515) 739-1430  Access Code: 294586
 +
International Dial-in Numbers: https://www.freeconferencecall.com/wall/ord#international
 +
FAQ’s, tips and other helpful information regarding FreeConferenceCall.com is available at www.HL7.org > Resources > Tools and Resources > FreeConferenceCall.com Tip Sheet.
 +
 
 +
* Meeting Minutes are on confluence here: http://confluence.hl7.org:8090/display/OO/OO+Meeting+Minutes
 +
 
 
* List Serve: specimen@hl7.lists.org
 
* List Serve: specimen@hl7.lists.org
 +
 +
Link to pre-publication version of DAM: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2018JUN.docx
 +
- this will be updated with link to published version shortly we hope
 +
 +
==FHIR Resource Specimen Updates ==
 +
List of gForge Trackers to work through:
 +
#17424 = Specimen.subject must be optional: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17424&start=0
 +
discussed 7/10 - needs more work; 7/24 - ready for vote
 +
#17389 = Extend Specimen by adding specimen condition: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17389&start=0
 +
discussed 7/10 - ready for vote
 +
#17386 = Extend Observation.specimen by adding investigator specimen comments: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17386&start=0
 +
was already closed, but ok, since we can use specimen.note for this - new tracker #17522 for expanding author references on annotation to include organization, maybe practitionerRole and device
 +
#17380 = Extend Specimen.collection by adding fasting status: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17380&start=0
 +
7/24 - ready for vote
 +
#16215 = Wrong content shown (specimen-uv-ips):https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=16215&start=0
 +
7/24 - technical only - no need to discuss (seems to be fixed now)
 +
 +
SpecimenDefinition related:
 +
#14753 = Move preference to entryDefinition - 2018-Jan Core #88: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14753&start=0
 +
#14752& = Handling condition valueset doesn't match definition - 2018-Jan Core #87: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14752&start=0
 +
#14751 = Make lightExposure a CodeableConcept - 2018-Jan Core #86: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14751&start=0
 +
#14750 = conservation => preservation - 2018-Jan Core #85: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14750&start=0
 +
#14749 = Drop lightExposure - 2018-Jan Core #84: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14749&start=0
 +
#14748 = Add examples for SpecimenDefinition - 2018-Jan Core #83: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14748&start=0
 +
#14747 = Group elements under "container" backbone element - 2018-Jan Core #82: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14747&start=0
 +
#14746 = Drop specimenToLab and move children to root - 2018-Jan Core #81: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14746&start=0
 +
 +
 +
== May 2017 Ballot Cycle Minutes and ballot spreadsheet==
 +
*[[File:SPM_Minutes_20170503_ConCall.docx|Minutes 20170503 ConfCall]]
 +
*[[File:SPM_Minutes_20170517_ConCall.docx|Minutes 20170517 ConfCall]]
 +
*[[File:SPM_Minutes_20170524_ConCall.docx|Minutes 20170524 ConfCall]] - no quorum
 +
* 5/31/2017 NO CALL
 +
*[[File:SPM_Minutes_20170607_ConCall.docx|Minutes 20170607 ConfCall]]
 +
*[[File:SPM_Minutes_201706014_ConCall.docx|Minutes 201706014 ConfCall]]
 +
*[[File:SPM_Minutes_201706021ConCall.docx|Minutes 201706021 ConfCall]]
 +
*[[File:SPM_Minutes_201706028_ConCall.docx|Minutes 201706028 ConfCall]]
 +
* 7/5/2017 - no quorum
 +
*[[File:SPM_Minutes_20170712_ConCall.docx|Minutes 201706712 ConfCall]]
 +
* 7/19/2017 - no quorum
 +
*[[File:SPM_Minutes_20170726_ConCall.docx|Minutes 201706726 ConfCall]]
 +
*[[File:SPM_Minutes_20170802_ConCall.docx|Minutes 20170802 ConfCall]]
 +
*[[File:explant use case.docx|Explanted device use case]]
 +
*[[File:SPM_Minutes_20170816_ConCall.docx|Minutes 20170816 ConfCall]]
 +
*[[File:SPM_Minutes_20170823_ConCall.docx|Minutes 20170823 ConfCall]]
 +
*[[File:SPM_Minutes_20170830_ConCall.docx|Minutes 20170830 ConfCall]]
 +
*[[File:SPM_Minutes_20170906_ConCall.docx|Minutes 20170906 ConfCall]]
 +
* 9/20/2017 - Call canceled
 +
*[[File:SPM_Minutes_20170927_ConCall.docx|Minutes 20170927 ConfCall]]
 +
* 10/4/2017 - Call canceled
 +
* 10/11/2017 - Call canceled
 +
* 10/18/2017 - Call canceled
 +
*[[File:SPM_Minutes_20171025_ConCall.docx|Minutes 20171025 ConfCall]]
 +
* 11/1/2017 - Call canceled
 +
*[[File:SPM_Minutes_20171108_ConCall.docx|Minutes 20171108 ConfCall]]
 +
* 11/15/2017 - Call canceled
 +
* 11/22/2017 - Call canceled
 +
*[[File:SPM_Minutes_20171129_ConCall.docx|Minutes 20171129 ConfCall]]
 +
* 12/6/2017 - Call canceled
 +
* 12/13/2017 - Call canceled
 +
*[[File:SPM_Minutes_20171220_ConCall.docx|Minutes 20171220 ConfCall]]
 +
* 12/27/2017 - Call canceled
 +
*[[File:SPM_Minutes_20180103_ConCall.docx|Minutes 20180103 ConfCall]]
 +
 +
Latest ballot reconciliation spreadsheet:  [[Image:ballotcomments_V3_DAM_SPECIMEN_R2_I1_2017MAY_Consolidated.xlsx|Ballot Recon Spreadsheet for Specimen DAM]]
 +
 +
Current version of the updated document - is for members only: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_PostRecon.docx
  
 
== Minutes==
 
== Minutes==
Line 79: Line 152:
 
January 4, 2017 - no quorum
 
January 4, 2017 - no quorum
 
*[[File:SPM_Minutes_20170111_ConCall.docx|Minutes 20170111 ConfCall]]
 
*[[File:SPM_Minutes_20170111_ConCall.docx|Minutes 20170111 ConfCall]]
 +
*[[File:SPM_Minutes_20170125_ConCall.docx|Minutes 20170125 ConfCall]]
 +
*[[File:SPM_Minutes_20170201_ConCall.docx|Minutes 20170201 ConfCall]]
 +
*[[File:SPM_Minutes_20170215_ConCall.docx|Minutes 20170215 ConfCall]]
 +
*[[File:SPM_Minutes_20170222_ConCall.docx|Minutes 20170222 ConfCall]]
 +
*[[File:SPM_Minutes_20170301_ConCall.docx|Minutes 20170301 ConfCall]]
 +
*[[File:SPM_Minutes_20170308_ConCall.docx|Minutes 20170308 ConfCall]]
 +
*[[File:SPM_Minutes_20170315_ConCall.docx|Minutes 20170315 ConfCall]]
 +
*[[File:SPM_Minutes_20170322_ConCall.docx|Minutes 20170322 ConfCall]]
 +
 +
 
==Reference Documents==
 
==Reference Documents==
 
*[[File:BRIDG_4.0_Specimen-Related_Classes_-_20150701.pptx||||Introduction to the Specimen related attributes of BRIDG|]]
 
*[[File:BRIDG_4.0_Specimen-Related_Classes_-_20150701.pptx||||Introduction to the Specimen related attributes of BRIDG|]]
Line 86: Line 169:
 
These are flagged as MEMBERS ONLY documents at this time:
 
These are flagged as MEMBERS ONLY documents at this time:
  
Spreadsheet filtered on source change for addition to the ballot document - only showing the latest version here - all others are in the same directory:
+
Spreadsheet filtered on DRAFT - only showing the latest version here - all others are in the same directory:
http://www.hl7.org/documentcenter/public/wg/orders/Copy%20of%20Copy%20of%20BRIDG%20to%20Specimen%20DAM%20Mapping%20Spreadsheet%20as%20of%2020161221.xlsx
+
http://www.hl7.org/documentcenter/public/wg/orders/Copy%20of%20Copy%20of%20BRIDG%20to%20Specimen%20DAM%20Mapping%20Spreadsheet%20as%20of%2020170315.xlsx
  
 
Draft ballot documents:
 
Draft ballot documents:
http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_20161214.docx
+
http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_20170322.docx
  
 
EA file:
 
EA file:
Line 96: Line 179:
  
 
==Links==
 
==Links==
BRIDG Model information: www.bridgmodel.org
+
BRIDG Model information: www.bridgmodel.org has been moved here as of Feb 2017: https://bridgmodel.nci.nih.gov
  
  

Latest revision as of 15:14, 25 July 2018

Back to Orders & Observations WG main page

Back to OO Projects page

Scope of Specimen Project

The scope of the project is to:

  • Complete DAM incorporating various use cases (OO, CG, II, AP and Harmonize with BRIDG Model (biologic specimen) and Address issues encountered by IHE AP when applying the Specimen DAM to CDA during development of Anatomic Pathology Structured Report (APSR)) - see publication: ADD LINK TO LATEST VERSION HERE!!!
  • Update the FHIR resource specimen per latest DAM publication / and gForge trackers = http://build.fhir.org/specimen.html
  • Complete Specimen V3 models based on other use cases (CG, II, AP)
  • Consider V2 Updates
  • Support Specimen Identifier formats as further established by AP workgroup

Leadership

  • V3 CMET/RMIM compare + updates – Lorraine Constable
  • V2 SPM compare + updates – Riki Merrick, Hans Buitendijk
  • Validate Specimen Identifier format support - TBD
  • BRIGD Harmonization - Ed Helton, Riki Merrick
  • IHE-AP ASPR work - Gunter Haroske

Conference Call Information

  • Date: Tuesday - starting July 10, 2018
    • Time: 3 - 4 PM EDT

Online Meeting Link: https://join.freeconferencecall.com/ord Online Meeting ID: ord

If not on FCC or not wanting to use VOIP, use the following dial-in: Dial-in Number (United States): (515) 739-1430 Access Code: 294586 International Dial-in Numbers: https://www.freeconferencecall.com/wall/ord#international FAQ’s, tips and other helpful information regarding FreeConferenceCall.com is available at www.HL7.org > Resources > Tools and Resources > FreeConferenceCall.com Tip Sheet.

  • List Serve: specimen@hl7.lists.org

Link to pre-publication version of DAM: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2018JUN.docx - this will be updated with link to published version shortly we hope

FHIR Resource Specimen Updates

List of gForge Trackers to work through:

  1. 17424 = Specimen.subject must be optional: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17424&start=0

discussed 7/10 - needs more work; 7/24 - ready for vote

  1. 17389 = Extend Specimen by adding specimen condition: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17389&start=0

discussed 7/10 - ready for vote

  1. 17386 = Extend Observation.specimen by adding investigator specimen comments: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17386&start=0

was already closed, but ok, since we can use specimen.note for this - new tracker #17522 for expanding author references on annotation to include organization, maybe practitionerRole and device

  1. 17380 = Extend Specimen.collection by adding fasting status: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17380&start=0

7/24 - ready for vote

  1. 16215 = Wrong content shown (specimen-uv-ips):https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=16215&start=0

7/24 - technical only - no need to discuss (seems to be fixed now)

SpecimenDefinition related:

  1. 14753 = Move preference to entryDefinition - 2018-Jan Core #88: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14753&start=0
  2. 14752& = Handling condition valueset doesn't match definition - 2018-Jan Core #87: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14752&start=0
  3. 14751 = Make lightExposure a CodeableConcept - 2018-Jan Core #86: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14751&start=0
  4. 14750 = conservation => preservation - 2018-Jan Core #85: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14750&start=0
  5. 14749 = Drop lightExposure - 2018-Jan Core #84: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14749&start=0
  6. 14748 = Add examples for SpecimenDefinition - 2018-Jan Core #83: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14748&start=0
  7. 14747 = Group elements under "container" backbone element - 2018-Jan Core #82: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14747&start=0
  8. 14746 = Drop specimenToLab and move children to root - 2018-Jan Core #81: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14746&start=0


May 2017 Ballot Cycle Minutes and ballot spreadsheet

Latest ballot reconciliation spreadsheet: File:Ballotcomments V3 DAM SPECIMEN R2 I1 2017MAY Consolidated.xlsx

Current version of the updated document - is for members only: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_PostRecon.docx

Minutes

no call July 1, 2016

August 12, 2016 - no quorum

September 2, 2016 - no quorum September 9, 2016 - no call

November 9, 2016 - no quorum

January 4, 2017 - no quorum


Reference Documents

Working Documents

These are flagged as MEMBERS ONLY documents at this time:

Spreadsheet filtered on DRAFT - only showing the latest version here - all others are in the same directory: http://www.hl7.org/documentcenter/public/wg/orders/Copy%20of%20Copy%20of%20BRIDG%20to%20Specimen%20DAM%20Mapping%20Spreadsheet%20as%20of%2020170315.xlsx

Draft ballot documents: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_20170322.docx

EA file: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R1_2014May-BRIDG_Discussions.zip

Links

BRIDG Model information: www.bridgmodel.org has been moved here as of Feb 2017: https://bridgmodel.nci.nih.gov


OLDER DOCUMENTATION:

Conference Calls and Minutes

Minutes

Working Documents

Use Cases

Status & Deliverables

Ballot Reconciliation Editing

Ballot spreadsheet for tracking work assignment - PLEASE do NOT filter on the google doc, as it affects the entire document, rather download and work in your local copy and then update the google spreadsheet afterwards: spreadsheet

Balloted document section: use cases File:V3 DAM SPECIMEN R1 I1 2014MAY UseCases.docx - Lori Dieterle

Balloted document section: Tables with definitions File:V3 DAM SPECIMEN R1 I1 2014MAY DefinitionTables.docx - Kathy Walsh

File:V3 DAM SPECIMEN R1 I1 2014MAY DefinitionTables section2.docx - Mark Jones

Section 3 - Riki Merrick - is covered in entire document file

Editor for entire document: [[1]] members only site Riki Merrick

Editor for Model: Lorraine Constable - file is here: [[2]]

Draft Model

Specimen Model in Gforge: http://gforge.hl7.org/gf/project/orders/scmsvn/?action=browse&path=%2Ftrunk%2FPOSP%2FDAM%2F

Definitions spreadsheet: File:Specimen DAM classes and attributes with notes.xlsx

  • snapshot of Draft Model work in progress (draft model on the left, excerpts from NCI LSDAM on the right):

Org.hl7.oo.Specimen.information.cim.png

Links

LS DAM Wiki: https://wiki.nci.nih.gov/x/cxRlAQ

LS DAM Overview: https://wiki.nci.nih.gov/download/attachments/76677702/LSDAMSpecimenHL7OO.pptx

LS DAM (Enterprise Architect) : https://wiki.nci.nih.gov/download/attachments/23401587/LSDAMWorking.EAP

LS DAM (HTML): http://ncientarch.info/sandbox/LSDAM2_2_2/EARoot/EA3/EA1/EA1/EA1/EA1/EA1/EA4/EA157.htm