Difference between revisions of "Open Source FHIR implementations"

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Back to [[FHIR]] Home page
 
Back to [[FHIR]] Home page
  
= Introduction =
+
=Introduction=
  
 
This page lists known open source implementations of the FHIR specification. For a list of running servers, see [[Publicly Available FHIR Servers for testing]]
 
This page lists known open source implementations of the FHIR specification. For a list of running servers, see [[Publicly Available FHIR Servers for testing]]
  
== Reference Libraries ==
+
==Reference Libraries==
  
* '''JAVA''': https://github.com/jamesagnew/hapi-fhir - James Agnew / University Health Network
+
*'''JAVA''': https://github.com/jamesagnew/hapi-fhir - James Agnew / University Health Network
** Open-source Java library for quickly creating FHIR Servers and Clients
+
**Open-source Java library for quickly creating FHIR Servers and Clients
** Geared towards adding FHIR capability to existing applications (e.g. it's not a database, it's a library for quickly bolting FHIR on to your own database, or connecting to other FHIR servers as a client)
+
**Geared towards adding FHIR capability to existing applications (e.g. it's not a database, it's a library for quickly bolting FHIR on to your own database, or connecting to other FHIR servers as a client)
** Supports all resource types, most operations, and both xml and json encodings
+
**Supports all resource types, most operations, and both xml and json encodings
** "Tinder" code generator (Maven plugin) creates model objects and clients from Profiles and Conformance statements
+
**"Tinder" code generator (Maven plugin) creates model objects and clients from Profiles and Conformance statements
  
* '''DotNet FHIR Client''': https://github.com/ewoutkramer/fhir-net-api
+
*'''DotNet FHIR Client''': https://github.com/FirelyTeam/fhir-net-api
** Reference client with branches supporting each version of FHIR
+
**Reference client with branches supporting each version of FHIR
** Supports all resource types, searches, all operations, xml + json
+
**Supports all resource types, searches, all operations, xml + json
** Validation, FhirPath, very basic terminology server implementation
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**Validation, FhirPath, very basic terminology server implementation
** Available via NuGet
+
**Available via NuGet
** Documentation available here http://docs.simplifier.net/fhirnetapi/index.html
+
**Documentation available here http://docs.simplifier.net/fhirnetapi/index.html
  
* '''DotNet Server''': https://github.com/FirelyTeam/spark
+
*'''DotNet Server''': https://github.com/FirelyTeam/spark
** Reference server built in parallel with Grahame's to test the specification (actively developed during DSTU2, recent updates to support STU3)
+
**Reference server built in parallel with Grahame's to test the specification (actively developed during DSTU2, recent updates to support STU3)
** Supports all resource types, searches, many operations, xml + json
+
**Supports all resource types, searches, many operations, xml + json
** Built in .NET with the .NET reference implementation, WebApi 2.0 library, Mongo DB for storage and search.
+
**Built in .NET with the .NET reference implementation, WebApi 2.0 library, Mongo DB for storage and search.
** Note there is also a WebApi façade that can be used to put in front of your own storage
 
*** https://github.com/ewoutkramer/fhir-net-api/tree/develop-stu3/src/Hl7.Fhir.WebApi
 
*** Demo usage of the Façade https://github.com/ewoutkramer/fhir-net-api/tree/develop-stu3/src/Hl7.DemoFileSystemFhirServer
 
  
* '''Java - SMART on FHIR''': https://sandbox.smarthealthit.org
+
*'''Java - SMART on FHIR''': https://sandbox.smarthealthit.org
** [https://github.com/smart-on-fhir/installer Open source] reference implementation of the SMART on FHIR stack in Java and MySql based on [https://github.com/mitreid-connect/OpenID-Connect-Java-Spring-Server MitreId Connect] and [http://jamesagnew.github.io/hapi-fhir/ HAPI FHIR].  
+
**[https://github.com/smart-on-fhir/installer Open source] reference implementation of the SMART on FHIR stack in Java and MySql based on [https://github.com/mitreid-connect/OpenID-Connect-Java-Spring-Server MitreId Connect] and [http://jamesagnew.github.io/hapi-fhir/ HAPI FHIR].
** Incorporates synthetic and de-identified [https://github.com/smart-on-fhir/generated-sample-data data sets] for [http://docs.smarthealthit.org/data/dstu2-sandbox-data.html DSTU2] and [http://docs.smarthealthit.org/data/stu3-sandbox-data.html STU3], as well data management tools including the [https://github.com/smart-on-fhir/patient-browser SMART Patient Browser] and [https://github.com/smart-on-fhir/fred FRED FHIR Resource Editor].
+
**Incorporates synthetic and de-identified [https://github.com/smart-on-fhir/generated-sample-data data sets] for [http://docs.smarthealthit.org/data/dstu2-sandbox-data.html DSTU2] and [http://docs.smarthealthit.org/data/stu3-sandbox-data.html STU3], as well data management tools including the [https://github.com/smart-on-fhir/patient-browser SMART Patient Browser] and [https://github.com/smart-on-fhir/fred FRED FHIR Resource Editor].
** Sample applications for [https://github.com/smart-on-fhir/sample-apps DSTU2] and [https://github.com/smart-on-fhir/sample-apps-stu3 STU3], client libraries for [http://docs.smarthealthit.org/clients/javascript/ JavaScript], [http://docs.smarthealthit.org/clients/python/ Python] and [http://docs.smarthealthit.org/Swift-SMART/ Swift], and developer tools such as the [https://github.com/smart-on-fhir/fhir-support FHIR Support Matrix]
+
**Sample applications for [https://github.com/smart-on-fhir/sample-apps DSTU2] and [https://github.com/smart-on-fhir/sample-apps-stu3 STU3], client libraries for [http://docs.smarthealthit.org/clients/javascript/ JavaScript], [http://docs.smarthealthit.org/clients/python/ Python] and [http://docs.smarthealthit.org/Swift-SMART/ Swift], and developer tools such as the [https://github.com/smart-on-fhir/fhir-support FHIR Support Matrix]
** Technical documentation is at http://docs.smarthealthit.org and code is at https://github.com/smart-on-fhir
+
**Technical documentation is at http://docs.smarthealthit.org and code is at https://github.com/smart-on-fhir
  
* '''Delphi''': http://github.com/grahamegrieve/fhirserver
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*'''Delphi''': http://github.com/grahamegrieve/fhirserver
** De facto reference server (runs at http://fhir.healthintersections.com.au)
+
**De facto reference server (runs at http://test.fhir.org and http://tx.fhir.org)
** general purpose server that implements all of the specification
+
**general purpose server that implements all of the specification
** development platform: (delphi / windows / mssql)
+
**development platform: (delphi / windows / mssql)
  
* '''Ruby''': https://github.com/fhir-crucible/fhir_client and https://github.com/fhir-crucible/fhir_models
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*'''Ruby''': https://github.com/fhir-crucible/fhir_client and https://github.com/fhir-crucible/fhir_models
** Open-source Ruby library for quickly creating FHIR applications
+
**Open-source Ruby library for quickly creating FHIR applications
** Geared towards adding FHIR capability to your Ruby applications.
+
**Geared towards adding FHIR capability to your Ruby applications.
** Supports STU3 (default) and DSTU2, all resource types, most operations, and both xml and json encodings
+
**Supports R4 (default), STU3, and DSTU2, all resource types, most operations, and both xml and json encodings
  
* Python: https://github.com/smart-on-fhir/client-py
+
*'''Python - SMART on FHIR''': https://github.com/smart-on-fhir/client-py
 +
**Open-source Python library for quickly creating FHIR applications
 +
**Supports (R4 coming soon...), STU3, and DSTU2, all resource types, json encodings, some validation
 +
**<nowiki>*fhirclient*, a flexible Python client for FHIR servers supporting the SMART on FHIR protocol</nowiki>
 +
**data model classes that handle (de)serialization and allow to work with FHIR data in a Pythonic way
 +
**<nowiki>*fhir-parser*  application to build custom resources</nowiki>
 +
**Demo Flask App
  
== Javascript ==
+
*'''Swift - SMART on FHIR'''
 +
**Open-source Swift library for quickly creating FHIR applications: https://github.com/smart-on-fhir/Swift-FHIR: https://github.com/smart-on-fhir/Swift-FHIR
 +
**Supports R4 tbd, STU3, and DSTU2, all resource types, json encodings, some validation
 +
**<nowiki>*Swift-Smart*: a full client implementation of the 🔥FHIR specification for building apps: </nowiki>https://github.com/smart-on-fhir/Swift-SMART
 +
**Swift classes representing data models of 🔥 FHIR elements and resources, compatible with iOS 11 and OS X 10.13 and later
 +
**<nowiki>*fhir-parser*  application to build custom resources</nowiki>
 +
 
 +
==Javascript==
  
 
There is no single reference implementation for Javascript.  
 
There is no single reference implementation for Javascript.  
  
* '''JavaScript''': https://github.com/FHIR/fhir.js
+
*'''JavaScript''': https://github.com/FHIR/fhir.js
** Open-source JavaScript library for communication with FHIR servers
+
**Open-source JavaScript library for communication with FHIR servers
  
  
 
Todo: Javascript community to fill this section out...
 
Todo: Javascript community to fill this section out...
  
== Other Open source Implementations ==
+
==Other Open source Implementations==
  
  
* '''JavaScript - Node.js / Express:''' https://github.com/Asymmetrik/node-fhir-server-core
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*'''JavaScript - Node.js / Express:''' https://github.com/Asymmetrik/node-fhir-server-core
** Standalone open-source FHIR server from Asymmetri khttps://www.asymmetrik.com/asymmetrik-fhir/
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**Standalone open-source FHIR server from Asymmetri khttps://www.asymmetrik.com/asymmetrik-fhir/
** Winner of the ONC Secure FHIR Server Challenge (2018) https://www.challenge.gov/challenge/secure-api-server-showdown-challenge/
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**Winner of the ONC Secure FHIR Server Challenge (2018) https://www.challenge.gov/challenge/secure-api-server-showdown-challenge/
** Additional resource profiles in heavy development
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**Additional resource profiles in heavy development
** Implements a core FHIR server, with custom adapters for non-FHIR data sources.
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**Implements a core FHIR server, with custom adapters for non-FHIR data sources.
** Example adapter for MongoDB: https://github.com/Asymmetrik/node-fhir-server-mongo [https://github.com/Asymmetrik/node-fhir-server-mongo]
+
**Example adapter for MongoDB: https://github.com/Asymmetrik/node-fhir-server-mongo [https://github.com/Asymmetrik/node-fhir-server-mongo]
  
  
* [https://github.com/fhirbase/fhirbase FHIRBase] - open source relational storage for FHIR with document API based on PostgreSQL. FHIRBase is an attempt to take the best parts of Relational & Document Databases for persistence of FHIR resources. FHIRBase stores resources relationally and gives you the power of SQL for querying & aggregating. At the same time FHIRBase provides a set of SQL procedures & views to persist and retrieve resources as a json documents in one hop.
+
*[https://github.com/fhirbase/fhirbase FHIRBase] - open source relational storage for FHIR with document API based on PostgreSQL. FHIRBase is an attempt to take the best parts of Relational & Document Databases for persistence of FHIR resources. FHIRBase stores resources relationally and gives you the power of SQL for querying & aggregating. At the same time FHIRBase provides a set of SQL procedures & views to persist and retrieve resources as a json documents in one hop.
  
* the FHIR build tool itself is open source and includes various definitional and reasoning tools. See [http://gforge.hl7.org/gf/project/fhir]. If you aren't signed up to the HL7 GForge, you can access the FHIR repository at [http://gforge.hl7.org/svn/fhir/trunk] anonymously.
+
*the FHIR build tool itself is open source and includes various definitional and reasoning tools. See [http://gforge.hl7.org/gf/project/fhir]. If you aren't signed up to the HL7 GForge, you can access the FHIR repository at [http://gforge.hl7.org/svn/fhir/trunk] anonymously.
  
* [https://github.com/kwboone/FHIR-JSON-to-XML-Converter JSON-to-XML-Converter] - JavaScript based open source library to convert FHIR between JSON and XML. It is built from the FHIR XML Schema.
+
*[https://github.com/kwboone/FHIR-JSON-to-XML-Converter JSON-to-XML-Converter] - JavaScript based open source library to convert FHIR between JSON and XML. It is built from the FHIR XML Schema.
  
* [https://github.com/Efferent-Health/FHIR-dotnetcore] - DSTU-2 FHIR entities compatible with .Net Core
+
*[https://github.com/Efferent-Health/FHIR-dotnetcore] - DSTU-2 FHIR entities compatible with .Net Core
  
* FHIR terminology resources are available on Valentia SnoChillies terminology Server: https://valentiatech.snochillies.com/
+
*FHIR terminology resources are available on Valentia SnoChillies terminology Server: https://valentiatech.snochillies.com/
  
 
     * Value Sets
 
     * Value Sets
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         * https://valentiatech.snochillies.com ( GUI )
 
         * https://valentiatech.snochillies.com ( GUI )
  
  * SNOMED browser: https://snochillies.com/  
+
  * SNOMED browser: https://snochillies.com/ by Abdul Rauf (abdul_rauf_2005@msn.com)
 
          
 
          
  
* [http://its.patientsfirst.org.nz/RestService.svc/Terminz Patients First NZ Terminology Server] - Exemplar FHIR-based Terminology Service, including SNOMED CT International Edition.
+
*[http://its.patientsfirst.org.nz/RestService.svc/Terminz Patients First NZ Terminology Server] - Exemplar FHIR-based Terminology Service, including SNOMED CT International Edition.
 +
 
 +
*https://github.com/fhir-crucible/crucible - Crucible FHIR Testing Platform. Public instance at https://projectcrucible.org
 +
 
 +
*[https://github.com/synthetichealth/synthea Synthea] - Synthetic patient simulation that generates longitudinal FHIR (R4, STU3, and DSTU2) records suitable for software development, integration, testing, demoing. Over 60 diseases with reasonable comorbidities and treatments. Supports Patient, Condition, Encounter, Observation, DiagnosticReport, Immunization, AllergyIntolerance, MedicationRequest, Procedure, ImagingStudy, Organization, Practitioner, Claim, ExplanationOfBenefit.
 +
 
 +
*[https://www.npmjs.com/package/fhir-kit-client FHIR Kit Client] - A Node.js FHIR client library
 +
 
 +
*[https://github.com/Vermonster/fhir-kit-create-react FHIR Kit Create React App] - "Create React App" template for a confidential FHIR ReactJS application.
 +
 
 +
*[https://github.com/HL7/fhirpath.js fhirpaths.js] – a JavaScript implementation of FHIRPath
  
* [https://github.com/fhir-crucible/crucible https://github.com/fhir-crucible/crucible] - Crucible FHIR Testing Platform. Public instance at [https://projectcrucible.org https://projectcrucible.org]
+
*[http://lhncbc.github.io/lforms/ LHC-Forms] – NLM’s JavaScript form rendering package with support for FHIR Questionnaire and partial support for the Questionnaire’s SDC profile.
  
* [https://github.com/synthetichealth/synthea Synthea] - Synthetic patient simulation that generates longitudinal FHIR (STU3 and DSTU2) records suitable for software development, integration, testing, demoing. Over 35 diseases with reasonable comorbidities and treatments. Supports Patient, Condition, Encounter, Observation, DiagnosticReport, Immunization, AllergyIntolerance, MedicationRequest, Procedure, Organization.
+
*[https://lhcformbuilder.nlm.nih.gov/ NLM’s Form Builder] – A builder for forms that can import or export FHIR Questionnaire resources.  Open source, at https://github.com/lhncbc/formbuilder-lhcforms.
  
* [https://www.npmjs.com/package/fhir-kit-client FHIR Kit Client] - A Node.js FHIR client library
+
*[https://github.com/lhncbc/lforms-fhir-app NLM’s SMART on FHIR SDC Questionnaire App]
  
* [https://github.com/Vermonster/fhir-kit-create-react FHIR Kit Create React App] - "Create React App" template for a confidential FHIR ReactJS application.
+
*[https://github.com/lhncbc/ucum-lhc UCUM-LHC] – NLM’s open source library for validating and converting units from the Unified Code for Units of Measure (UCUM).  
  
 
[[Category:FHIR]]
 
[[Category:FHIR]]

Revision as of 20:47, 14 August 2019

Back to FHIR Home page

Introduction

This page lists known open source implementations of the FHIR specification. For a list of running servers, see Publicly Available FHIR Servers for testing

Reference Libraries

  • JAVA: https://github.com/jamesagnew/hapi-fhir - James Agnew / University Health Network
    • Open-source Java library for quickly creating FHIR Servers and Clients
    • Geared towards adding FHIR capability to existing applications (e.g. it's not a database, it's a library for quickly bolting FHIR on to your own database, or connecting to other FHIR servers as a client)
    • Supports all resource types, most operations, and both xml and json encodings
    • "Tinder" code generator (Maven plugin) creates model objects and clients from Profiles and Conformance statements
  • DotNet Server: https://github.com/FirelyTeam/spark
    • Reference server built in parallel with Grahame's to test the specification (actively developed during DSTU2, recent updates to support STU3)
    • Supports all resource types, searches, many operations, xml + json
    • Built in .NET with the .NET reference implementation, WebApi 2.0 library, Mongo DB for storage and search.
  • Python - SMART on FHIR: https://github.com/smart-on-fhir/client-py
    • Open-source Python library for quickly creating FHIR applications
    • Supports (R4 coming soon...), STU3, and DSTU2, all resource types, json encodings, some validation
    • *fhirclient*, a flexible Python client for FHIR servers supporting the SMART on FHIR protocol
    • data model classes that handle (de)serialization and allow to work with FHIR data in a Pythonic way
    • *fhir-parser* application to build custom resources
    • Demo Flask App

Javascript

There is no single reference implementation for Javascript.


Todo: Javascript community to fill this section out...

Other Open source Implementations


  • FHIRBase - open source relational storage for FHIR with document API based on PostgreSQL. FHIRBase is an attempt to take the best parts of Relational & Document Databases for persistence of FHIR resources. FHIRBase stores resources relationally and gives you the power of SQL for querying & aggregating. At the same time FHIRBase provides a set of SQL procedures & views to persist and retrieve resources as a json documents in one hop.
  • the FHIR build tool itself is open source and includes various definitional and reasoning tools. See [2]. If you aren't signed up to the HL7 GForge, you can access the FHIR repository at [3] anonymously.
  • JSON-to-XML-Converter - JavaScript based open source library to convert FHIR between JSON and XML. It is built from the FHIR XML Schema.
  • [4] - DSTU-2 FHIR entities compatible with .Net Core
   * Value Sets
        * $expand
        * $validate-code
   * Code Systems (SNOMED CT, LOINC)
        * $lookup
        * $subsumes
   * Concept Map
        * $translate
        * $closure
   * Capability Statement ( format can in xml or in json )
        * https://valentiatech.snochillies.com/fhir/metadata (as in XML default)
        * https://valentiatech.snochillies.com ( GUI )
* SNOMED browser: https://snochillies.com/ by Abdul Rauf (abdul_rauf_2005@msn.com)
        
  • Synthea - Synthetic patient simulation that generates longitudinal FHIR (R4, STU3, and DSTU2) records suitable for software development, integration, testing, demoing. Over 60 diseases with reasonable comorbidities and treatments. Supports Patient, Condition, Encounter, Observation, DiagnosticReport, Immunization, AllergyIntolerance, MedicationRequest, Procedure, ImagingStudy, Organization, Practitioner, Claim, ExplanationOfBenefit.
  • LHC-Forms – NLM’s JavaScript form rendering package with support for FHIR Questionnaire and partial support for the Questionnaire’s SDC profile.
  • UCUM-LHC – NLM’s open source library for validating and converting units from the Unified Code for Units of Measure (UCUM).