Difference between revisions of "Open Source FHIR implementations"

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Back to [[FHIR]] Home page
 
Back to [[FHIR]] Home page
  
= Introduction =
+
=Introduction=
  
 
This page lists known open source implementations of the FHIR specification. For a list of running servers, see [[Publicly Available FHIR Servers for testing]]
 
This page lists known open source implementations of the FHIR specification. For a list of running servers, see [[Publicly Available FHIR Servers for testing]]
  
== Reference Implementations ==
+
==Reference Libraries==
  
Note that the FHIR specification itself includes several reference implementations at [http://hl7.org/implement/standards/fhir/implementation.htm#Use]. The scope of the reference models included the FHIR specification itself is limited to object models derived from resource definitions or profiles, along with parsers for both XML and json, and necessary supporting code. Further code - clients, servers, transforms to other formats - is encouraged, but won't be included in the specification itself.
+
*'''JAVA''': https://github.com/jamesagnew/hapi-fhir - James Agnew / University Health Network
 +
**Open-source Java library for quickly creating FHIR Servers and Clients
 +
**Geared towards adding FHIR capability to existing applications (e.g. it's not a database, it's a library for quickly bolting FHIR on to your own database, or connecting to other FHIR servers as a client)
 +
**Supports all resource types, most operations, and both xml and json encodings
 +
**"Tinder" code generator (Maven plugin) creates model objects and clients from Profiles and Conformance statements
  
Note that the reference implementations are covered under a different license to the FHIR specification. For now, this is the standard OSI approved BSD license (BSD-3-Clause, [http://opensource.org/licenses/BSD-3-Clause]). The HL7 OHT license is not used because it's not on the list of OSI approved licenses ([http://opensource.org/licenses]), and because there is a huge component (FHIR itself) that cannot be covered under the OHT IP rules (rather a problem for the v3 tools too).
+
*'''DotNet FHIR Client''': https://github.com/FirelyTeam/fhir-net-api
 +
**Reference client with branches supporting each version of FHIR
 +
**Supports all resource types, searches, all operations, xml + json
 +
**Validation, FhirPath, very basic terminology server implementation
 +
**Available via NuGet
 +
**Documentation available here http://docs.simplifier.net/fhirnetapi/index.html
  
== Other open source Implementations ==
+
*'''DotNet Server''': https://github.com/FirelyTeam/spark
 +
**Reference server built in parallel with Grahame's to test the specification (actively developed during DSTU2, recent updates to support STU3)
 +
**Supports all resource types, searches, many operations, xml + json
 +
**Built in .NET with the .NET reference implementation, WebApi 2.0 library, Mongo DB for storage and search.
  
* http://github.com/grahamegrieve/fhirserver
+
*'''Java - SMART on FHIR''': https://sandbox.smarthealthit.org
** De facto reference server (runs at http://fhir.healthintersections.com.au)
+
**[https://github.com/smart-on-fhir/installer Open source] reference implementation of the SMART on FHIR stack in Java and MySql based on [https://github.com/mitreid-connect/OpenID-Connect-Java-Spring-Server MitreId Connect] and [http://jamesagnew.github.io/hapi-fhir/ HAPI FHIR].
** general purpose server that implements all of the specification
+
**Incorporates synthetic and de-identified [https://github.com/smart-on-fhir/generated-sample-data data sets] for [http://docs.smarthealthit.org/data/dstu2-sandbox-data.html DSTU2] and [http://docs.smarthealthit.org/data/stu3-sandbox-data.html STU3], as well data management tools including the [https://github.com/smart-on-fhir/patient-browser SMART Patient Browser] and [https://github.com/smart-on-fhir/fred FRED FHIR Resource Editor].
** development platform: (delphi / windows / mssql)
+
**Sample applications for [https://github.com/smart-on-fhir/sample-apps DSTU2] and [https://github.com/smart-on-fhir/sample-apps-stu3 STU3], client libraries for [http://docs.smarthealthit.org/clients/javascript/ JavaScript], [http://docs.smarthealthit.org/clients/python/ Python] and [http://docs.smarthealthit.org/Swift-SMART/ Swift], and developer tools such as the [https://github.com/smart-on-fhir/fhir-support FHIR Support Matrix]
 +
**Technical documentation is at http://docs.smarthealthit.org and code is at https://github.com/smart-on-fhir
  
* https://fhir-open-api.smarthealthit.org - Josh Mandel / SMART Platforms
+
*'''Delphi''': http://github.com/grahamegrieve/fhirserver
** Open-source server in Grails (Java/Groovy) + Postgresql
+
**De facto reference server (runs at http://test.fhir.org and http://tx.fhir.org)
** "SMART on FHIR" Server: https://fhir-open-api.smarthealthit.org | [https://github.com/smart-on-fhir/installer Source]
+
**general purpose server that implements all of the specification
** "FHIR Starter" App Launcher https://apps.fhir.me | [https://github.com/smart-on-fhir/fapps Source]
+
**development platform: (delphi / windows / mssql)
  
* https://github.com/furore-fhir/spark
+
*'''Ruby''': https://github.com/fhir-crucible/fhir_client and https://github.com/fhir-crucible/fhir_models
** Reference server built in parrallel with Grahame's to test the specification
+
**Open-source Ruby library for quickly creating FHIR applications
** Supports all resource types, searches, all operations, xml + json
+
**Geared towards adding FHIR capability to your Ruby applications.
** Built in .NET with the .NET reference implementation, WebApi 2.0 library, Mongo DB for storage and search.
+
**Supports R4 (default), STU3, and DSTU2, all resource types, most operations, and both xml and json encodings
  
* https://github.com/jamesagnew/hapi-fhir - James Agnew / University Health Network
+
*'''Python - SMART on FHIR''': https://github.com/smart-on-fhir/client-py
** Open-source Java library for quickly creating FHIR Servers and Clients
+
**Open-source Python library for quickly creating FHIR applications
** Geared towards adding FHIR capability to existing applications (e.g. it's not a database, it's a library for quickly bolting FHIR on to your own database, or connecting to other FHIR servers as a client)
+
**Supports (R4 coming soon...), STU3, and DSTU2, all resource types, json encodings, some validation
** Supports all resource types, most operations, and both xml and json encodings
+
**<nowiki>*fhirclient*, a flexible Python client for FHIR servers supporting the SMART on FHIR protocol</nowiki>
** "Tinder" code generator (Maven plugin) creates model objects and clients from Profiles and Conformance statements
+
**data model classes that handle (de)serialization and allow to work with FHIR data in a Pythonic way
 +
**<nowiki>*fhir-parser*  application to build custom resources</nowiki>
 +
**Demo Flask App
  
* the FHIR build tool itself is open source and includes various definitional and reasoning tools. See [http://gforge.hl7.org/gf/project/fhir]. If you aren't signed up to the HL7 GForge, you can access the FHIR repository at [http://gforge.hl7.org/svn/fhir/trunk] anonymously.
+
*'''Swift - SMART on FHIR'''
 +
**Open-source Swift library for quickly creating FHIR applications: https://github.com/smart-on-fhir/Swift-FHIR: https://github.com/smart-on-fhir/Swift-FHIR
 +
**Supports R4 tbd, STU3, and DSTU2, all resource types, json encodings, some validation
 +
**<nowiki>*Swift-Smart*: a full client implementation of the 🔥FHIR specification for building apps: </nowiki>https://github.com/smart-on-fhir/Swift-SMART
 +
**Swift classes representing data models of 🔥 FHIR elements and resources, compatible with iOS 11 and OS X 10.13 and later
 +
**<nowiki>*fhir-parser*  application to build custom resources</nowiki>
  
* [https://github.com/fhirbase/fhirbase FHIRBase] - open source relational storage for FHIR with document API based on PostgreSQL. FHIRBase is an attempt to take the best parts of Relational & Document Databases for persistence of FHIR resources. FHIRBase stores resources relationally and gives you the power of SQL for querying & aggregating. At the same time FHIRBase provides a set of SQL procedures & views to persist and retrieve resources as a json documents in one hop.
+
==Javascript==
  
* [https://github.com/kwboone/FHIR-JSON-to-XML-Converter JSON-to-XML-Converter] - JavaScript based open source library to convert FHIR between JSON and XML. It is built from the FHIR XML Schema.
+
There is no single reference implementation for Javascript.  
  
* [https://github.com/Efferent-Health/FHIR-dotnetcore] - DSTU-2 FHIR entities compatible with .Net Core
+
*'''JavaScript''': https://github.com/FHIR/fhir.js
 +
**Open-source JavaScript library for communication with FHIR servers
 +
 
 +
 
 +
Todo: Javascript community to fill this section out...
 +
 
 +
==Other Open source Implementations==
 +
 
 +
 
 +
*'''JavaScript - Node.js / Express:''' https://github.com/Asymmetrik/node-fhir-server-core
 +
**Standalone open-source FHIR server from Asymmetri khttps://www.asymmetrik.com/asymmetrik-fhir/
 +
**Winner of the ONC Secure FHIR Server Challenge (2018) https://www.challenge.gov/challenge/secure-api-server-showdown-challenge/
 +
**Additional resource profiles in heavy development
 +
**Implements a core FHIR server, with custom adapters for non-FHIR data sources.
 +
**Example adapter for MongoDB: https://github.com/Asymmetrik/node-fhir-server-mongo [https://github.com/Asymmetrik/node-fhir-server-mongo]
 +
 
 +
 
 +
*[https://github.com/fhirbase/fhirbase FHIRBase] - open source relational storage for FHIR with document API based on PostgreSQL. FHIRBase is an attempt to take the best parts of Relational & Document Databases for persistence of FHIR resources. FHIRBase stores resources relationally and gives you the power of SQL for querying & aggregating. At the same time FHIRBase provides a set of SQL procedures & views to persist and retrieve resources as a json documents in one hop.
 +
 
 +
*the FHIR build tool itself is open source and includes various definitional and reasoning tools. See [http://gforge.hl7.org/gf/project/fhir]. If you aren't signed up to the HL7 GForge, you can access the FHIR repository at [http://gforge.hl7.org/svn/fhir/trunk] anonymously.
 +
 
 +
*[https://github.com/kwboone/FHIR-JSON-to-XML-Converter JSON-to-XML-Converter] - JavaScript based open source library to convert FHIR between JSON and XML. It is built from the FHIR XML Schema.
 +
 
 +
*[https://github.com/Efferent-Health/FHIR-dotnetcore] - DSTU-2 FHIR entities compatible with .Net Core
 +
 
 +
*FHIR terminology resources are available on Valentia SnoChillies terminology Server: https://valentiatech.snochillies.com/
 +
 
 +
    * Value Sets
 +
        * $expand
 +
        * $validate-code
 +
    * Code Systems (SNOMED CT, LOINC)
 +
        * $lookup
 +
        * $subsumes
 +
    * Concept Map
 +
        * $translate
 +
        * $closure
 +
    * Capability Statement ( format can in xml or in json )
 +
        * https://valentiatech.snochillies.com/fhir/metadata (as in XML default)
 +
        * https://valentiatech.snochillies.com ( GUI )
 +
 
 +
* SNOMED browser: https://snochillies.com/ by Abdul Rauf (abdul_rauf_2005@msn.com)
 +
       
 +
 
 +
*[http://its.patientsfirst.org.nz/RestService.svc/Terminz Patients First NZ Terminology Server] - Exemplar FHIR-based Terminology Service, including SNOMED CT International Edition.
 +
 
 +
*https://github.com/fhir-crucible/crucible - Crucible FHIR Testing Platform. Public instance at https://projectcrucible.org
 +
 
 +
*[https://github.com/synthetichealth/synthea Synthea] - Synthetic patient simulation that generates longitudinal FHIR (R4, STU3, and DSTU2) records suitable for software development, integration, testing, demoing. Over 60 diseases with reasonable comorbidities and treatments. Supports Patient, Condition, Encounter, Observation, DiagnosticReport, Immunization, AllergyIntolerance, MedicationRequest, Procedure, ImagingStudy, Organization, Practitioner, Claim, ExplanationOfBenefit.
 +
 
 +
*[https://www.npmjs.com/package/fhir-kit-client FHIR Kit Client] - A Node.js FHIR client library
 +
 
 +
*[https://github.com/Vermonster/fhir-kit-create-react FHIR Kit Create React App] - "Create React App" template for a confidential FHIR ReactJS application.
 +
 
 +
*[https://github.com/HL7/fhirpath.js fhirpaths.js] – a JavaScript implementation of FHIRPath
 +
 
 +
*[http://lhncbc.github.io/lforms/ LHC-Forms] – NLM’s JavaScript form rendering package with support for FHIR Questionnaire and partial support for the Questionnaire’s SDC profile.
 +
 
 +
*[https://lhcformbuilder.nlm.nih.gov/ NLM’s Form Builder] – A builder for forms that can import or export FHIR Questionnaire resources.  Open source, at https://github.com/lhncbc/formbuilder-lhcforms.
 +
 
 +
*[https://github.com/lhncbc/lforms-fhir-app NLM’s SMART on FHIR SDC Questionnaire App]
 +
 
 +
*[https://github.com/lhncbc/ucum-lhc UCUM-LHC] – NLM’s open source library for validating and converting units from the Unified Code for Units of Measure (UCUM).
  
 
[[Category:FHIR]]
 
[[Category:FHIR]]

Revision as of 20:47, 14 August 2019

Back to FHIR Home page

Introduction

This page lists known open source implementations of the FHIR specification. For a list of running servers, see Publicly Available FHIR Servers for testing

Reference Libraries

  • JAVA: https://github.com/jamesagnew/hapi-fhir - James Agnew / University Health Network
    • Open-source Java library for quickly creating FHIR Servers and Clients
    • Geared towards adding FHIR capability to existing applications (e.g. it's not a database, it's a library for quickly bolting FHIR on to your own database, or connecting to other FHIR servers as a client)
    • Supports all resource types, most operations, and both xml and json encodings
    • "Tinder" code generator (Maven plugin) creates model objects and clients from Profiles and Conformance statements
  • DotNet Server: https://github.com/FirelyTeam/spark
    • Reference server built in parallel with Grahame's to test the specification (actively developed during DSTU2, recent updates to support STU3)
    • Supports all resource types, searches, many operations, xml + json
    • Built in .NET with the .NET reference implementation, WebApi 2.0 library, Mongo DB for storage and search.
  • Python - SMART on FHIR: https://github.com/smart-on-fhir/client-py
    • Open-source Python library for quickly creating FHIR applications
    • Supports (R4 coming soon...), STU3, and DSTU2, all resource types, json encodings, some validation
    • *fhirclient*, a flexible Python client for FHIR servers supporting the SMART on FHIR protocol
    • data model classes that handle (de)serialization and allow to work with FHIR data in a Pythonic way
    • *fhir-parser* application to build custom resources
    • Demo Flask App

Javascript

There is no single reference implementation for Javascript.


Todo: Javascript community to fill this section out...

Other Open source Implementations


  • FHIRBase - open source relational storage for FHIR with document API based on PostgreSQL. FHIRBase is an attempt to take the best parts of Relational & Document Databases for persistence of FHIR resources. FHIRBase stores resources relationally and gives you the power of SQL for querying & aggregating. At the same time FHIRBase provides a set of SQL procedures & views to persist and retrieve resources as a json documents in one hop.
  • the FHIR build tool itself is open source and includes various definitional and reasoning tools. See [2]. If you aren't signed up to the HL7 GForge, you can access the FHIR repository at [3] anonymously.
  • JSON-to-XML-Converter - JavaScript based open source library to convert FHIR between JSON and XML. It is built from the FHIR XML Schema.
  • [4] - DSTU-2 FHIR entities compatible with .Net Core
   * Value Sets
        * $expand
        * $validate-code
   * Code Systems (SNOMED CT, LOINC)
        * $lookup
        * $subsumes
   * Concept Map
        * $translate
        * $closure
   * Capability Statement ( format can in xml or in json )
        * https://valentiatech.snochillies.com/fhir/metadata (as in XML default)
        * https://valentiatech.snochillies.com ( GUI )
* SNOMED browser: https://snochillies.com/ by Abdul Rauf (abdul_rauf_2005@msn.com)
        
  • Synthea - Synthetic patient simulation that generates longitudinal FHIR (R4, STU3, and DSTU2) records suitable for software development, integration, testing, demoing. Over 60 diseases with reasonable comorbidities and treatments. Supports Patient, Condition, Encounter, Observation, DiagnosticReport, Immunization, AllergyIntolerance, MedicationRequest, Procedure, ImagingStudy, Organization, Practitioner, Claim, ExplanationOfBenefit.
  • LHC-Forms – NLM’s JavaScript form rendering package with support for FHIR Questionnaire and partial support for the Questionnaire’s SDC profile.
  • UCUM-LHC – NLM’s open source library for validating and converting units from the Unified Code for Units of Measure (UCUM).