Difference between revisions of "Specimen"

Revision as of 02:12, 3 November 2016

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Scope of Specimen Project

The scope of the project is to:

Complete DAM incorporating various use cases (OO, CG, II, AP) - see publication:
Complete Specimen V3 models based on other use cases (CG, II, AP)
Consider V2 Updates
Support Specimen Identifier formats as further established by AP workgroup
Harmonize with BRIDG Model (biologic specimen)
Address issues encountered by IHE AP when applying the Specimen DAM to CDA during development of Anatomic Pathology Structured Report (APSR)

Leadership

V3 CMET/RMIM compare + updates – Lorraine Constable
V2 SPM compare + updates – Riki Merrick, Hans Buitendijk
Validate Specimen Identifier format support - TBD
BRIGD Harmonization - Ed Helton, Riki Merrick
IHE-AP ASPR work - Gunter Haroske

Conference Call Information

Dates: Every WEDNESDAY starting 11/02/2016
- Time: 12:00 PM - 1:00 PM ET
Phone: +1 770-657-9270
- Passcode: 398652#
Webex: https://join.me/vernetzt.us
List Serve: specimen@hl7.lists.org

Minutes

no call July 1, 2016

August 12, 2016 - no quorum

September 2, 2016 - no quorum September 9, 2016 - no call

File:SPM Minutes 20160916 ConCall.docx
File:SPM Minutes 20161014 ConCall.docx - no quorum
File:SPM Minutes 20161028 ConCall.docx - no quorum
File:SPM Minutes 20161102 ConCall.docx

Reference Documents

Working Documents

Spreadsheet filtered on source change for addition to the ballot document: http://www.hl7.org/documentcenter/public/wg/orders/Copy%20of%20BRIDG%20to%20Specimen%20DAM%20Mapping%20Spreadsheet%20as%20of%20Nov%202%202016.xlsx

Draft ballot documents: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_20161102.docx

EA file: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R1_2014May-BRIDG_Discussions.zip

Links

BRIDG Model information: www.bridgmodel.org

OLDER DOCUMENTATION:

Conference Calls and Minutes

Dates: Every other Thursday, starting Feb 16, 2012
- Time: 12:00 - 13:00 EST
Phone: +1 770-657-9270
- Passcode: 653212
Webex: http://www.mymeetings.com/siemens/nc/join.php?i=741301183&p=&t=c
- Passcode: HL7OO
List Serve: specimen@hl7.lists.org

Minutes

Working Documents

Use Cases

Clinical Sequencing Project - Identified Use Cases to Consider in Specimen CMET - from CG ClinSeq.doc
Specimen Use Case for Isolate Representation
Specimen Use Case for Environmental Specimen
Medical Research Use Case and Specimen Core Diagram Media:Specimen-Core Model Diagram and Medical Research Use Case Process Flow.xls
Origin of Specimen
- Need to indicate whether the specimen is human, animal, soil, etc.
- For viral genetics where DNA/RNA can be extracted from a micro-organism.
Notes from May WGM
- II perspective mainly interested in specimen in context of interventional imaging
- An introduction to the DICOM specimen information model is available in DICOM Part 17 (available free at ftp://medical.nema.org/medical/dicom/2011/11_17pu.pdf) Annex NN.
- Detailed specimen information can be found in DICOM Part 3 (available free at ftp://medical.nema.org/medical/dicom/2011/11_03pu.pdf). This information that has been specified by DICOM WG26 "Pathology" (DICOM Supplement 122 "Specimen Identification and Revised Pathology" Project) should be taken into consideration in the project.

Status & Deliverables

Ballot Reconciliation Editing

Ballot spreadsheet for tracking work assignment - PLEASE do NOT filter on the google doc, as it affects the entire document, rather download and work in your local copy and then update the google spreadsheet afterwards: spreadsheet

Balloted document section: use cases File:V3 DAM SPECIMEN R1 I1 2014MAY UseCases.docx - Lori Dieterle

Balloted document section: Tables with definitions File:V3 DAM SPECIMEN R1 I1 2014MAY DefinitionTables.docx - Kathy Walsh

File:V3 DAM SPECIMEN R1 I1 2014MAY DefinitionTables section2.docx - Mark Jones

Section 3 - Riki Merrick - is covered in entire document file

Editor for entire document: [[1]] members only site Riki Merrick

Editor for Model: Lorraine Constable - file is here: [[2]]

Draft Model

Specimen Model in Gforge: http://gforge.hl7.org/gf/project/orders/scmsvn/?action=browse&path=%2Ftrunk%2FPOSP%2FDAM%2F

Definitions spreadsheet: File:Specimen DAM classes and attributes with notes.xlsx

snapshot of Draft Model work in progress (draft model on the left, excerpts from NCI LSDAM on the right):

Links

LS DAM Wiki: https://wiki.nci.nih.gov/x/cxRlAQ

LS DAM Overview: https://wiki.nci.nih.gov/download/attachments/76677702/LSDAMSpecimenHL7OO.pptx

LS DAM (Enterprise Architect) : https://wiki.nci.nih.gov/download/attachments/23401587/LSDAMWorking.EAP

LS DAM (HTML): http://ncientarch.info/sandbox/LSDAM2_2_2/EARoot/EA3/EA1/EA1/EA1/EA1/EA1/EA4/EA157.htm

Difference between revisions of "Specimen"

Revision as of 02:12, 3 November 2016

Contents

Scope of Specimen Project

Leadership

Conference Call Information

Minutes

Reference Documents

Working Documents

Links

OLDER DOCUMENTATION:

Conference Calls and Minutes

Minutes

Working Documents

Use Cases

Status & Deliverables

Ballot Reconciliation Editing

Draft Model

Links

Navigation menu

Personal tools

Namespaces

Variants

Views

More

Search

Navigation

groups

meetings

general

Tools

@@ Line 81: / Line 81: @@
 Spreadsheet filtered on source change for addition to the ballot document:
+http://www.hl7.org/documentcenter/public/wg/orders/Copy%20of%20BRIDG%20to%20Specimen%20DAM%20Mapping%20Spreadsheet%20as%20of%20Nov%202%202016.xlsx
 Draft ballot documents:
+http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_20161102.docx
+EA file:
+http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R1_2014May-BRIDG_Discussions.zip
 ==Links==