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Difference between revisions of "CTS2/doc/Entity Example SNOMED CT"

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     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 
     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 
     xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/Entity  
 
     xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/Entity  
−
     http://informatics.mayo.edu/svn/trunk/cts2/spec/submission/OMGServerMap/entity/Entity.xsd">
+
     http://www.omg.org/spec/CTS2/130601/entity/Entity.xsd">
 
     <heading xmlns="http://schema.omg.org/spec/CTS2/1.0/Core">
 
     <heading xmlns="http://schema.omg.org/spec/CTS2/1.0/Core">
 
         <resourceRoot>codesystems/SNOMED_CT_core/version20120131/entity/206421002</resourceRoot>
 
         <resourceRoot>codesystems/SNOMED_CT_core/version20120131/entity/206421002</resourceRoot>
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</EntityDescriptionMsg>
 
</EntityDescriptionMsg>
 
</pre>
 
</pre>
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 +
{{ CTS2-Navbox }}

Latest revision as of 23:14, 22 December 2015

The following example shows how the SNOMED CT lexical description of Perinatal epistaxis could be represented in the CTS2 format.

Minimal XML

The XML below represents the minimum amount of information that would be needed to completely represent the basic information about a concept from SNOMED CT. 

<?xml version="1.0" ?>
<EntityDescription xmlns="http://schema.omg.org/spec/CTS2/1.0/Entity"
                   xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core">
    <classDescription entryState="ACTIVE" about="http://id.ihtsdo.org/sctid/206421002" descriptionState="PRIMITIVE">
        <entityID>
            <core:namespace>sctid</core:namespace>
            <core:name>206421002</core:name>
        </entityID>
        <alternateEntityID>
            <core:namespace>sctfsn</core:namespace>
            <core:name>Perinatal epistaxis (disorder)</core:name>
        </alternateEntityID>
        <describingCodeSystemVersion>
            <core:version uri="http://id.ihtsdo.org/sctid/900000000000207008/20120131"/>
        </describingCodeSystemVersion>
        <designation externalIdentifier="316560014" designationRole="PREFERRED">
            <core:value>Perinatal epistaxis</core:value>
            <core:language>US English</core:language>
            <caseSignificance uri="http://id.ihtsdo.org/sctid/900000000000020002"/>
        </designation>
        <designation externalIdentifier="316561013" designationRole="ALTERNATIVE">
            <core:value>Perinatal nose hemorrhage</core:value>
            <core:language>US English</core:language>
            <caseSignificance uri="http://id.ihtsdo.org/sctid/900000000000020002"/>
        </designation>
        <entityType uri="http://www.w3.org/2002/07/owl#Class"/>
    </classDescription>
</EntityDescription>

JSON Equivalent

{  "EntityDescription": {
        "classDescription": {
            "entryState": "ACTIVE",
            "descriptionState": "PRIMITIVE",
            "designation": [
                {   "value": "Perinatal epistaxis",
                    "designationRole": "PREFERRED",
                    "externalIdentifier": 316560014,
                    "language": {
                        "content": "US English"
                    },
                    "caseSignificance": {
                        "uri": "http://id.ihtsdo.org/sctid/900000000000020002"
                    }
                },
                {   "assertedInCodeSystemVersion": "SNOMED CT core_20120131",
                    "value": "Perinatal nose hemorrhage",
                    "designationRole": "ALTERNATIVE",
                    "externalIdentifier": 316561013,
                    "language": {
                        "content": "US English"
                    },
                    "caseSignificance": {
                        "uri": "http://id.ihtsdo.org/sctid/900000000000020002"
                    }
                }
            ],
            "about": "http://id.ihtsdo.org/sctid/206421002",
            "alternateEntityID": {
                "name": "Perinatal epistaxis (disorder)",
                "namespace": "sctfsn"
            },
            "entityType": {
                "uri": "http://www.w3.org/2002/07/owl#Class",
            },
            "describingCodeSystemVersion": {
                "version": {
                    "uri": "http://id.ihtsdo.org/sctid/900000000000207008/20120131"
                }
            },
            "entityID": {
                "name": 206421002,
                "namespace": "sctid"
            }
        },
        "xmlns": "http://schema.omg.org/spec/CTS2/1.0/Entity"
    }
}

Service Enhanced XML

One of the values that a CTS2 Service implementation adds to a resource is that it "completes the picture" inserting URI's, names and hyperlinks to additional information it knows about. The above example, when retrieved from the URL could return something that looked like the output below. 

<?xml version="1.0" encoding="UTF-8"?>
<EntityDescriptionMsg xmlns="http://schema.omg.org/spec/CTS2/1.0/Entity"
    xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/Entity 
    http://www.omg.org/spec/CTS2/130601/entity/Entity.xsd">
    <heading xmlns="http://schema.omg.org/spec/CTS2/1.0/Core">
        <resourceRoot>codesystems/SNOMED_CT_core/version20120131/entity/206421002</resourceRoot>
        <resourceURI>http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_core/version20120131/entity/206421002</resourceURI>
        <accessDate>2012-07-13T15:02:05.909Z</accessDate>
    </heading>
    <EntityDescription>
        <classDescription entryState="ACTIVE" about="http://id.ihtsdo.org/sctid/206421002" descriptionState="PRIMITIVE">
            <entityID>
                <core:namespace>sctid</core:namespace>
                <core:name>206421002</core:name>
            </entityID>
            <alternateEntityID>
                <core:namespace>sctfsn</core:namespace>
                <core:name>Perinatal epistaxis (disorder)</core:name>
            </alternateEntityID>
            <describingCodeSystemVersion>
                <core:version uri="http://id.ihtsdo.org/sctid/900000000000207008/20120131" 
                    href="http://informatics.mayo.edu/cts2/rest/codesystem/SNOMED_CT_core/version/20120131">SNOMED CT core_20120131</core:version>
                <core:codeSystem uri="http://id.ihtsdo.org/sctid/900000000000207008" 
                    href="http://informatics.mayo.edu/cts2/rest/codesystem/SNOMED_CT_core">SNOMED CT core</core:codeSystem>
            </describingCodeSystemVersion>
            <designation assertedInCodeSystemVersion="SNOMED CT core_20120131" externalIdentifier="316560014" designationRole="PREFERRED">
                <core:value>Perinatal epistaxis</core:value>
                <core:language uri="http://www.omg.org/spec/LNG#en-us" 
                    href="http://informatics.mayo.edu/cts2/rest/codesystem/LNG/version/2012/entity/en-us">US English</core:language>
                <caseSignificance uri="http://id.ihtsdo.org/sctid/900000000000020002"
                    href="http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_model_component/version20120131/entity/900000000000020002">Initial character case insensitive</caseSignificance>
            </designation>
            <designation assertedInCodeSystemVersion="SNOMED CT core_20120131" externalIdentifier="316561013" designationRole="ALTERNATIVE">
                <core:value>Perinatal nose hemorrhage</core:value>
                <core:language uri="http://www.omg.org/spec/LNG#en-us"
                    href="http://informatics.mayo.edu/cts2/rest/codesystem/LNG/version/2012/entity/en-us">US English</core:language>
                <caseSignificance uri="http://id.ihtsdo.org/sctid/900000000000020002"
                    href="http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_model_component/version20120131/entity/900000000000020002">Initial character case insensitive</caseSignificance>
            </designation>
            <subjectOf>http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_core/version20120131/entity/206421002/subjectof</subjectOf>
            <targetOf>http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_core/version20120131/entity/206421002/targetof</targetOf>
            <parent uri="http://id.ihtsdo.org/sctid/111467008" href="http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_core/version20120131/entity/111467008">
                <core:namespace>sctfsn</core:namespace>
                <core:name>Fetal OR neonatal hemorrhage (disorder)</core:name>
            </parent>
            <parent uri="http://id.ihtsdo.org/sctid/12441001"  href="http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_core/version20120131/entity/12441001">
                <core:namespace>sctfsn</core:namespace>
                <core:name>Epistaxis (disorder)</core:name>
            </parent>
            <children>http://informatics.mayo.edu/cts2/rest/codesystems/SNOMED_CT_core/version20120131/entity/206421002/targetof</children>
            <entityType uri="http://www.w3.org/2002/07/owl#Class" href="http://informatics.mayo.edu/cts2/rest/codesystem/owl/version/20091027/entity/Class">
                <core:namespace>owl</core:namespace>
                <core:name>Class</core:name>
            </entityType>
        </classDescription>
    </EntityDescription>
</EntityDescriptionMsg>

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