Difference between revisions of "Specimen"
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==Scope of Specimen Project== | ==Scope of Specimen Project== | ||
The scope of the project is to: | The scope of the project is to: | ||
− | *Complete DAM incorporating various use cases (OO, CG, II, AP) | + | *Complete DAM incorporating various use cases (OO, CG, II, AP and Harmonize with BRIDG Model (biologic specimen) and Address issues encountered by IHE AP when applying the Specimen DAM to CDA during development of Anatomic Pathology Structured Report (APSR)) - see publication: ADD LINK TO LATEST VERSION HERE!!! |
+ | *Update the FHIR resource specimen per latest DAM publication / and gForge trackers = http://build.fhir.org/specimen.html | ||
*Complete Specimen V3 models based on other use cases (CG, II, AP) | *Complete Specimen V3 models based on other use cases (CG, II, AP) | ||
*Consider V2 Updates | *Consider V2 Updates | ||
*Support Specimen Identifier formats as further established by AP workgroup | *Support Specimen Identifier formats as further established by AP workgroup | ||
− | == Leadership == | + | ==Leadership== |
− | |||
− | |||
− | |||
*V3 CMET/RMIM compare + updates – Lorraine Constable | *V3 CMET/RMIM compare + updates – Lorraine Constable | ||
*V2 SPM compare + updates – Riki Merrick, Hans Buitendijk | *V2 SPM compare + updates – Riki Merrick, Hans Buitendijk | ||
*Validate Specimen Identifier format support - TBD | *Validate Specimen Identifier format support - TBD | ||
+ | * BRIGD Harmonization - Ed Helton, Riki Merrick | ||
+ | * IHE-AP ASPR work - Gunter Haroske | ||
+ | ==Conference Call Information== | ||
+ | *Date: Tuesday - starting July 10, 2018 | ||
+ | **Time: 3 - 4 PM EDT | ||
+ | Online Meeting Link: https://join.freeconferencecall.com/ord | ||
+ | Online Meeting ID: ord | ||
+ | |||
+ | If not on FCC or not wanting to use VOIP, use the following dial-in: | ||
+ | Dial-in Number (United States): (515) 739-1430 Access Code: 294586 | ||
+ | International Dial-in Numbers: https://www.freeconferencecall.com/wall/ord#international | ||
+ | FAQ’s, tips and other helpful information regarding FreeConferenceCall.com is available at www.HL7.org > Resources > Tools and Resources > FreeConferenceCall.com Tip Sheet. | ||
− | == Conference Calls and Minutes == | + | * Meeting Minutes are on confluence here: http://confluence.hl7.org:8090/display/OO/OO+Meeting+Minutes |
+ | |||
+ | * List Serve: specimen@hl7.lists.org | ||
+ | |||
+ | Link to pre-publication version of DAM: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2018JUN.docx | ||
+ | - this will be updated with link to published version shortly we hope | ||
+ | |||
+ | ==FHIR Resource Specimen Updates == | ||
+ | List of gForge Trackers to work through: | ||
+ | #17424 = Specimen.subject must be optional: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17424&start=0 | ||
+ | discussed 7/10 - needs more work; 7/24 - ready for vote | ||
+ | #17389 = Extend Specimen by adding specimen condition: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17389&start=0 | ||
+ | discussed 7/10 - ready for vote | ||
+ | #17386 = Extend Observation.specimen by adding investigator specimen comments: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17386&start=0 | ||
+ | was already closed, but ok, since we can use specimen.note for this - new tracker #17522 for expanding author references on annotation to include organization, maybe practitionerRole and device | ||
+ | #17380 = Extend Specimen.collection by adding fasting status: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17380&start=0 | ||
+ | 7/24 - ready for vote | ||
+ | #16215 = Wrong content shown (specimen-uv-ips):https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=16215&start=0 | ||
+ | 7/24 - technical only - no need to discuss (seems to be fixed now) | ||
+ | |||
+ | SpecimenDefinition related: | ||
+ | #14753 = Move preference to entryDefinition - 2018-Jan Core #88: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14753&start=0 | ||
+ | #14752& = Handling condition valueset doesn't match definition - 2018-Jan Core #87: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14752&start=0 | ||
+ | #14751 = Make lightExposure a CodeableConcept - 2018-Jan Core #86: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14751&start=0 | ||
+ | #14750 = conservation => preservation - 2018-Jan Core #85: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14750&start=0 | ||
+ | #14749 = Drop lightExposure - 2018-Jan Core #84: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14749&start=0 | ||
+ | #14748 = Add examples for SpecimenDefinition - 2018-Jan Core #83: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14748&start=0 | ||
+ | #14747 = Group elements under "container" backbone element - 2018-Jan Core #82: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14747&start=0 | ||
+ | #14746 = Drop specimenToLab and move children to root - 2018-Jan Core #81: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14746&start=0 | ||
+ | |||
+ | |||
+ | == May 2017 Ballot Cycle Minutes and ballot spreadsheet== | ||
+ | *[[File:SPM_Minutes_20170503_ConCall.docx|Minutes 20170503 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170517_ConCall.docx|Minutes 20170517 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170524_ConCall.docx|Minutes 20170524 ConfCall]] - no quorum | ||
+ | * 5/31/2017 NO CALL | ||
+ | *[[File:SPM_Minutes_20170607_ConCall.docx|Minutes 20170607 ConfCall]] | ||
+ | *[[File:SPM_Minutes_201706014_ConCall.docx|Minutes 201706014 ConfCall]] | ||
+ | *[[File:SPM_Minutes_201706021ConCall.docx|Minutes 201706021 ConfCall]] | ||
+ | *[[File:SPM_Minutes_201706028_ConCall.docx|Minutes 201706028 ConfCall]] | ||
+ | * 7/5/2017 - no quorum | ||
+ | *[[File:SPM_Minutes_20170712_ConCall.docx|Minutes 201706712 ConfCall]] | ||
+ | * 7/19/2017 - no quorum | ||
+ | *[[File:SPM_Minutes_20170726_ConCall.docx|Minutes 201706726 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170802_ConCall.docx|Minutes 20170802 ConfCall]] | ||
+ | *[[File:explant use case.docx|Explanted device use case]] | ||
+ | *[[File:SPM_Minutes_20170816_ConCall.docx|Minutes 20170816 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170823_ConCall.docx|Minutes 20170823 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170830_ConCall.docx|Minutes 20170830 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170906_ConCall.docx|Minutes 20170906 ConfCall]] | ||
+ | * 9/20/2017 - Call canceled | ||
+ | *[[File:SPM_Minutes_20170927_ConCall.docx|Minutes 20170927 ConfCall]] | ||
+ | * 10/4/2017 - Call canceled | ||
+ | * 10/11/2017 - Call canceled | ||
+ | * 10/18/2017 - Call canceled | ||
+ | *[[File:SPM_Minutes_20171025_ConCall.docx|Minutes 20171025 ConfCall]] | ||
+ | * 11/1/2017 - Call canceled | ||
+ | *[[File:SPM_Minutes_20171108_ConCall.docx|Minutes 20171108 ConfCall]] | ||
+ | * 11/15/2017 - Call canceled | ||
+ | * 11/22/2017 - Call canceled | ||
+ | *[[File:SPM_Minutes_20171129_ConCall.docx|Minutes 20171129 ConfCall]] | ||
+ | * 12/6/2017 - Call canceled | ||
+ | * 12/13/2017 - Call canceled | ||
+ | *[[File:SPM_Minutes_20171220_ConCall.docx|Minutes 20171220 ConfCall]] | ||
+ | * 12/27/2017 - Call canceled | ||
+ | *[[File:SPM_Minutes_20180103_ConCall.docx|Minutes 20180103 ConfCall]] | ||
+ | |||
+ | Latest ballot reconciliation spreadsheet: [[Image:ballotcomments_V3_DAM_SPECIMEN_R2_I1_2017MAY_Consolidated.xlsx|Ballot Recon Spreadsheet for Specimen DAM]] | ||
+ | |||
+ | Current version of the updated document - is for members only: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_PostRecon.docx | ||
+ | |||
+ | == Minutes== | ||
+ | *[[File:SPM Minutes 20150701 ConCallv1.docx|Minutes 20150701 ConfCall]] | ||
+ | *[[File:SPM Minutes 20150729 ConCall.docx|Minutes 20150729 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20150826_ConCallv1.docx|Minutes 20150826 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20150909_ConCall.docx|Minutes 20150909 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20150923_ConCall.docx|Minutes 20150923 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20151021_ConCall.docx|Minutes 20151021 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20151104_ConCall.docx|Minutes 20151104 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20151118_ConCall_v1.docx|Minutes 20151118 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20151202_ConCall.docx|Minutes 20151202 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20151216_ConCall.docx|Minutes 20151216 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160106_ConCall.docx|Minutes 20160106 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160129_ConCall.docx|Minutes 20160129 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160205_ConCall.docx|Minutes 20160205 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160212_ConCall.docx|Minutes 20160212 ConfCall]] - no quorum | ||
+ | *[[File:SPM_Minutes_20160219_ConCall.docx|Minutes 20160219 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160226_ConCall.docx|Minutes 20160226 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160304_ConCall.docx|Minutes 20160404 ConfCall]] - no quorum | ||
+ | *[[File:SPM_Minutes_20160311_ConCall.docx|Minutes 20160311 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160318_ConCall.docx|Minutes 20160318 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160325_ConCall.docx|Minutes 20160325 ConfCall]] - no quorum | ||
+ | *[[File:SPM_Minutes_20160401_ConCall.docx|Minutes 20160401 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160415_ConCall.docx|Minutes 20160415 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160422_ConCall.docx|Minutes 20160422 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160429_ConCall.docx|Minutes 20160429 ConfCall]] - no quorum | ||
+ | *[[File:SPM_Minutes_20160506_ConCall.docx|Minutes 20160506 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160527_ConCall.docx|Minutes 20160527 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160603_ConCall.docx|Minutes 20160603 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160610_ConCall.docx|Minutes 20160610 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160617_ConCall.docx|Minutes 20160617 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160624_ConCall.docx|Minutes 20160624 ConfCall]] | ||
+ | no call July 1, 2016 | ||
+ | *[[File:SPM_Minutes_20160708_ConCall.docx|Minutes 20160708 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160715_ConCall.docx|Minutes 20160715 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160722_ConCall.docx|Minutes 20160722 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160729_ConCall.docx|Minutes 20160729 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160805_ConCall.docx|Minutes 20160805 ConfCall]] | ||
+ | August 12, 2016 - no quorum | ||
+ | *[[File:SPM_Minutes_20160819_ConCall.docx|Minutes 20160819 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20160826_ConCall.docx|Minutes 20160826 ConfCall]] | ||
+ | September 2, 2016 - no quorum | ||
+ | September 9, 2016 - no call | ||
+ | *[[File:SPM_Minutes_20160916_ConCall.docx|Minutes 20160916 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20161014_ConCall.docx|Minutes 20161014 ConfCall]] - no quorum | ||
+ | *[[File:SPM_Minutes_20161028_ConCall.docx|Minutes 20161028 ConfCall]] - no quorum | ||
+ | *[[File:SPM_Minutes_20161102_ConCall.docx|Minutes 20161102 ConfCall]] | ||
+ | November 9, 2016 - no quorum | ||
+ | *[[File:SPM_Minutes_20161116_ConCall.docx|Minutes 20161116 ConfCall]] - no quorum | ||
+ | *[[File:SPM_Minutes_20161214_ConCall.docx|Minutes 20161214 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20161221_ConCall.docx|Minutes 20161221 ConfCall]] - no quorum | ||
+ | January 4, 2017 - no quorum | ||
+ | *[[File:SPM_Minutes_20170111_ConCall.docx|Minutes 20170111 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170125_ConCall.docx|Minutes 20170125 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170201_ConCall.docx|Minutes 20170201 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170215_ConCall.docx|Minutes 20170215 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170222_ConCall.docx|Minutes 20170222 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170301_ConCall.docx|Minutes 20170301 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170308_ConCall.docx|Minutes 20170308 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170315_ConCall.docx|Minutes 20170315 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20170322_ConCall.docx|Minutes 20170322 ConfCall]] | ||
+ | |||
+ | |||
+ | ==Reference Documents== | ||
+ | *[[File:BRIDG_4.0_Specimen-Related_Classes_-_20150701.pptx||||Introduction to the Specimen related attributes of BRIDG|]] | ||
+ | *[[File:Specimen_Workflow_150727.pdf||||AP needs for nested specimen in APSR CDA|]] | ||
+ | |||
+ | ==Working Documents== | ||
+ | These are flagged as MEMBERS ONLY documents at this time: | ||
+ | |||
+ | Spreadsheet filtered on DRAFT - only showing the latest version here - all others are in the same directory: | ||
+ | http://www.hl7.org/documentcenter/public/wg/orders/Copy%20of%20Copy%20of%20BRIDG%20to%20Specimen%20DAM%20Mapping%20Spreadsheet%20as%20of%2020170315.xlsx | ||
+ | |||
+ | Draft ballot documents: | ||
+ | http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_20170322.docx | ||
+ | |||
+ | EA file: | ||
+ | http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R1_2014May-BRIDG_Discussions.zip | ||
+ | |||
+ | ==Links== | ||
+ | BRIDG Model information: www.bridgmodel.org has been moved here as of Feb 2017: https://bridgmodel.nci.nih.gov | ||
+ | |||
+ | |||
+ | == OLDER DOCUMENTATION: == | ||
+ | === Conference Calls and Minutes === | ||
*Dates: Every other Thursday, starting Feb 16, 2012 | *Dates: Every other Thursday, starting Feb 16, 2012 | ||
**Time: 12:00 - 13:00 EST | **Time: 12:00 - 13:00 EST | ||
Line 28: | Line 192: | ||
* List Serve: specimen@hl7.lists.org | * List Serve: specimen@hl7.lists.org | ||
− | ==Minutes== | + | === Minutes=== |
*[[File:SPM_Minutes_20120216_ConCall.doc|Minutes 20120216 ConfCall]] | *[[File:SPM_Minutes_20120216_ConCall.doc|Minutes 20120216 ConfCall]] | ||
Line 62: | Line 226: | ||
*[[File:SPM_Minutes_20140109_ConCall.docx|Minutes 20140109 ConfCall]] | *[[File:SPM_Minutes_20140109_ConCall.docx|Minutes 20140109 ConfCall]] | ||
*[[File:SPM_Minutes_20140130_ConCall.docx|Minutes 20140130 ConfCall]] | *[[File:SPM_Minutes_20140130_ConCall.docx|Minutes 20140130 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140213_ConCall_v2.docx|Minutes 20140213 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140227_ConCall.docx|Minutes 20140227 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140306_ConCall.docx|Minutes 20140306 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140313_ConCall.docx|Minutes 20140313 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140320_ConCall.docx|Minutes 20140320 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140327_ConCall.docx|Minutes 20140327 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140605_ConCall.docx|Minutes 20140605 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140619_ConCall.docx|Minutes 20140619 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140703_ConCall.docx|Minutes 20140703 ConfCall]] | ||
+ | *[[File:SPM_Minutes_20140731_ConCall.docx|Minutes 20140731 ConfCall]] | ||
+ | *[[File:SPM Minutes 20140807 ConCall.docx|Minutes 20140807 ConfCall]] | ||
+ | *[[File:SPM Minutes 20140821 ConCall.docx|Minutes 20140821 ConfCall]] | ||
+ | *[[File:SPM Minutes 20140904 ConCall.docx|Minutes 20140904 ConfCall]] | ||
+ | *[[File:SPM Minutes 20141016 ConCall.docx|Minutes 20141016 ConfCall]] | ||
− | ==Working Documents== | + | ===Working Documents=== |
− | ===Use Cases=== | + | ====Use Cases==== |
* Clinical Sequencing Project - Identified [[Use Cases to Consider in Specimen CMET - from CG ClinSeq.doc]] | * Clinical Sequencing Project - Identified [[Use Cases to Consider in Specimen CMET - from CG ClinSeq.doc]] | ||
* [[Specimen Use Case for Isolate Representation]] | * [[Specimen Use Case for Isolate Representation]] | ||
+ | * [[Specimen Use Case for Environmental Specimen]] | ||
* Medical Research Use Case and Specimen Core Diagram [[Media:Specimen-Core Model Diagram and Medical Research Use Case Process Flow.xls]] | * Medical Research Use Case and Specimen Core Diagram [[Media:Specimen-Core Model Diagram and Medical Research Use Case Process Flow.xls]] | ||
* Origin of Specimen | * Origin of Specimen | ||
Line 76: | Line 255: | ||
** Detailed specimen information can be found in DICOM Part 3 (available free at ftp://medical.nema.org/medical/dicom/2011/11_03pu.pdf). This information that has been specified by DICOM WG26 "Pathology" (DICOM Supplement 122 "Specimen Identification and Revised Pathology" Project) should be taken into consideration in the project. | ** Detailed specimen information can be found in DICOM Part 3 (available free at ftp://medical.nema.org/medical/dicom/2011/11_03pu.pdf). This information that has been specified by DICOM WG26 "Pathology" (DICOM Supplement 122 "Specimen Identification and Revised Pathology" Project) should be taken into consideration in the project. | ||
− | ==Status & Deliverables== | + | ===Status & Deliverables=== |
− | ===Draft Model=== | + | ====Ballot Reconciliation Editing==== |
+ | Ballot spreadsheet for tracking work assignment - PLEASE do NOT filter on the google doc, as it affects the entire document, rather download and work in your local copy and then update the google spreadsheet afterwards: [https://docs.google.com/spreadsheets/d/1j9X6pMdBZ4Cs9nY4pMqyJKG9cOcI5eIoZhY95ymzwEQ/edit#gid=917128157|google spreadsheet] | ||
+ | |||
+ | Balloted document section: use cases | ||
+ | [[File: V3_DAM_SPECIMEN_R1_I1_2014MAY_UseCases.docx]] - Lori Dieterle | ||
+ | |||
+ | Balloted document section: Tables with definitions | ||
+ | [[File: V3_DAM_SPECIMEN_R1_I1_2014MAY_DefinitionTables.docx]] - Kathy Walsh | ||
+ | |||
+ | [[File: V3_DAM_SPECIMEN_R1_I1_2014MAY_DefinitionTables_section2.docx]] - Mark Jones | ||
+ | |||
+ | Section 3 - Riki Merrick - is covered in entire document file | ||
+ | |||
+ | Editor for entire document: [[http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R1_2015MAR.docx]] members only site Riki Merrick | ||
+ | |||
+ | Editor for Model: Lorraine Constable - file is here: [[http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R1_2014May_ModelFile.zip]] | ||
+ | |||
+ | ====Draft Model==== | ||
Specimen Model in Gforge: http://gforge.hl7.org/gf/project/orders/scmsvn/?action=browse&path=%2Ftrunk%2FPOSP%2FDAM%2F | Specimen Model in Gforge: http://gforge.hl7.org/gf/project/orders/scmsvn/?action=browse&path=%2Ftrunk%2FPOSP%2FDAM%2F | ||
Line 86: | Line 282: | ||
[[image:Org.hl7.oo.Specimen.information.cim.png]] | [[image:Org.hl7.oo.Specimen.information.cim.png]] | ||
− | ==Links== | + | ===Links=== |
LS DAM Wiki: https://wiki.nci.nih.gov/x/cxRlAQ | LS DAM Wiki: https://wiki.nci.nih.gov/x/cxRlAQ | ||
Latest revision as of 15:14, 25 July 2018
Back to Orders & Observations WG main page
Back to OO Projects page
Contents
Scope of Specimen Project
The scope of the project is to:
- Complete DAM incorporating various use cases (OO, CG, II, AP and Harmonize with BRIDG Model (biologic specimen) and Address issues encountered by IHE AP when applying the Specimen DAM to CDA during development of Anatomic Pathology Structured Report (APSR)) - see publication: ADD LINK TO LATEST VERSION HERE!!!
- Update the FHIR resource specimen per latest DAM publication / and gForge trackers = http://build.fhir.org/specimen.html
- Complete Specimen V3 models based on other use cases (CG, II, AP)
- Consider V2 Updates
- Support Specimen Identifier formats as further established by AP workgroup
Leadership
- V3 CMET/RMIM compare + updates – Lorraine Constable
- V2 SPM compare + updates – Riki Merrick, Hans Buitendijk
- Validate Specimen Identifier format support - TBD
- BRIGD Harmonization - Ed Helton, Riki Merrick
- IHE-AP ASPR work - Gunter Haroske
Conference Call Information
- Date: Tuesday - starting July 10, 2018
- Time: 3 - 4 PM EDT
Online Meeting Link: https://join.freeconferencecall.com/ord Online Meeting ID: ord
If not on FCC or not wanting to use VOIP, use the following dial-in: Dial-in Number (United States): (515) 739-1430 Access Code: 294586 International Dial-in Numbers: https://www.freeconferencecall.com/wall/ord#international FAQ’s, tips and other helpful information regarding FreeConferenceCall.com is available at www.HL7.org > Resources > Tools and Resources > FreeConferenceCall.com Tip Sheet.
- Meeting Minutes are on confluence here: http://confluence.hl7.org:8090/display/OO/OO+Meeting+Minutes
- List Serve: specimen@hl7.lists.org
Link to pre-publication version of DAM: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2018JUN.docx - this will be updated with link to published version shortly we hope
FHIR Resource Specimen Updates
List of gForge Trackers to work through:
- 17424 = Specimen.subject must be optional: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17424&start=0
discussed 7/10 - needs more work; 7/24 - ready for vote
- 17389 = Extend Specimen by adding specimen condition: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17389&start=0
discussed 7/10 - ready for vote
- 17386 = Extend Observation.specimen by adding investigator specimen comments: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17386&start=0
was already closed, but ok, since we can use specimen.note for this - new tracker #17522 for expanding author references on annotation to include organization, maybe practitionerRole and device
- 17380 = Extend Specimen.collection by adding fasting status: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=17380&start=0
7/24 - ready for vote
- 16215 = Wrong content shown (specimen-uv-ips):https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=16215&start=0
7/24 - technical only - no need to discuss (seems to be fixed now)
SpecimenDefinition related:
- 14753 = Move preference to entryDefinition - 2018-Jan Core #88: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14753&start=0
- 14752& = Handling condition valueset doesn't match definition - 2018-Jan Core #87: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14752&start=0
- 14751 = Make lightExposure a CodeableConcept - 2018-Jan Core #86: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14751&start=0
- 14750 = conservation => preservation - 2018-Jan Core #85: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14750&start=0
- 14749 = Drop lightExposure - 2018-Jan Core #84: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14749&start=0
- 14748 = Add examples for SpecimenDefinition - 2018-Jan Core #83: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14748&start=0
- 14747 = Group elements under "container" backbone element - 2018-Jan Core #82: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14747&start=0
- 14746 = Drop specimenToLab and move children to root - 2018-Jan Core #81: https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&tracker_item_id=14746&start=0
May 2017 Ballot Cycle Minutes and ballot spreadsheet
- File:SPM Minutes 20170503 ConCall.docx
- File:SPM Minutes 20170517 ConCall.docx
- File:SPM Minutes 20170524 ConCall.docx - no quorum
- 5/31/2017 NO CALL
- File:SPM Minutes 20170607 ConCall.docx
- File:SPM Minutes 201706014 ConCall.docx
- File:SPM Minutes 201706021ConCall.docx
- File:SPM Minutes 201706028 ConCall.docx
- 7/5/2017 - no quorum
- File:SPM Minutes 20170712 ConCall.docx
- 7/19/2017 - no quorum
- File:SPM Minutes 20170726 ConCall.docx
- File:SPM Minutes 20170802 ConCall.docx
- File:Explant use case.docx
- File:SPM Minutes 20170816 ConCall.docx
- File:SPM Minutes 20170823 ConCall.docx
- File:SPM Minutes 20170830 ConCall.docx
- File:SPM Minutes 20170906 ConCall.docx
- 9/20/2017 - Call canceled
- File:SPM Minutes 20170927 ConCall.docx
- 10/4/2017 - Call canceled
- 10/11/2017 - Call canceled
- 10/18/2017 - Call canceled
- File:SPM Minutes 20171025 ConCall.docx
- 11/1/2017 - Call canceled
- File:SPM Minutes 20171108 ConCall.docx
- 11/15/2017 - Call canceled
- 11/22/2017 - Call canceled
- File:SPM Minutes 20171129 ConCall.docx
- 12/6/2017 - Call canceled
- 12/13/2017 - Call canceled
- File:SPM Minutes 20171220 ConCall.docx
- 12/27/2017 - Call canceled
- File:SPM Minutes 20180103 ConCall.docx
Latest ballot reconciliation spreadsheet: File:Ballotcomments V3 DAM SPECIMEN R2 I1 2017MAY Consolidated.xlsx
Current version of the updated document - is for members only: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_PostRecon.docx
Minutes
- File:SPM Minutes 20150701 ConCallv1.docx
- File:SPM Minutes 20150729 ConCall.docx
- File:SPM Minutes 20150826 ConCallv1.docx
- File:SPM Minutes 20150909 ConCall.docx
- File:SPM Minutes 20150923 ConCall.docx
- File:SPM Minutes 20151021 ConCall.docx
- File:SPM Minutes 20151104 ConCall.docx
- File:SPM Minutes 20151118 ConCall v1.docx
- File:SPM Minutes 20151202 ConCall.docx
- File:SPM Minutes 20151216 ConCall.docx
- File:SPM Minutes 20160106 ConCall.docx
- File:SPM Minutes 20160129 ConCall.docx
- File:SPM Minutes 20160205 ConCall.docx
- File:SPM Minutes 20160212 ConCall.docx - no quorum
- File:SPM Minutes 20160219 ConCall.docx
- File:SPM Minutes 20160226 ConCall.docx
- File:SPM Minutes 20160304 ConCall.docx - no quorum
- File:SPM Minutes 20160311 ConCall.docx
- File:SPM Minutes 20160318 ConCall.docx
- File:SPM Minutes 20160325 ConCall.docx - no quorum
- File:SPM Minutes 20160401 ConCall.docx
- File:SPM Minutes 20160415 ConCall.docx
- File:SPM Minutes 20160422 ConCall.docx
- File:SPM Minutes 20160429 ConCall.docx - no quorum
- File:SPM Minutes 20160506 ConCall.docx
- File:SPM Minutes 20160527 ConCall.docx
- File:SPM Minutes 20160603 ConCall.docx
- File:SPM Minutes 20160610 ConCall.docx
- File:SPM Minutes 20160617 ConCall.docx
- File:SPM Minutes 20160624 ConCall.docx
no call July 1, 2016
- File:SPM Minutes 20160708 ConCall.docx
- File:SPM Minutes 20160715 ConCall.docx
- File:SPM Minutes 20160722 ConCall.docx
- File:SPM Minutes 20160729 ConCall.docx
- File:SPM Minutes 20160805 ConCall.docx
August 12, 2016 - no quorum
September 2, 2016 - no quorum September 9, 2016 - no call
- File:SPM Minutes 20160916 ConCall.docx
- File:SPM Minutes 20161014 ConCall.docx - no quorum
- File:SPM Minutes 20161028 ConCall.docx - no quorum
- File:SPM Minutes 20161102 ConCall.docx
November 9, 2016 - no quorum
- File:SPM Minutes 20161116 ConCall.docx - no quorum
- File:SPM Minutes 20161214 ConCall.docx
- File:SPM Minutes 20161221 ConCall.docx - no quorum
January 4, 2017 - no quorum
- File:SPM Minutes 20170111 ConCall.docx
- File:SPM Minutes 20170125 ConCall.docx
- File:SPM Minutes 20170201 ConCall.docx
- File:SPM Minutes 20170215 ConCall.docx
- File:SPM Minutes 20170222 ConCall.docx
- File:SPM Minutes 20170301 ConCall.docx
- File:SPM Minutes 20170308 ConCall.docx
- File:SPM Minutes 20170315 ConCall.docx
- File:SPM Minutes 20170322 ConCall.docx
Reference Documents
Working Documents
These are flagged as MEMBERS ONLY documents at this time:
Spreadsheet filtered on DRAFT - only showing the latest version here - all others are in the same directory: http://www.hl7.org/documentcenter/public/wg/orders/Copy%20of%20Copy%20of%20BRIDG%20to%20Specimen%20DAM%20Mapping%20Spreadsheet%20as%20of%2020170315.xlsx
Draft ballot documents: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R2_INFORM_2017JAN_20170322.docx
EA file: http://www.hl7.org/documentcenter/public/wg/orders/V3_DAM_Specimen_R1_2014May-BRIDG_Discussions.zip
Links
BRIDG Model information: www.bridgmodel.org has been moved here as of Feb 2017: https://bridgmodel.nci.nih.gov
OLDER DOCUMENTATION:
Conference Calls and Minutes
- Dates: Every other Thursday, starting Feb 16, 2012
- Time: 12:00 - 13:00 EST
- Phone: +1 770-657-9270
- Passcode: 653212
- Webex: http://www.mymeetings.com/siemens/nc/join.php?i=741301183&p=&t=c
- Passcode: HL7OO
- List Serve: specimen@hl7.lists.org
Minutes
- File:SPM Minutes 20120216 ConCall.doc
- File:SPM Minutes 20120329 ConCall.doc
- File:SPM Minutes 20120412 ConCall.docx
- File:SPM Minutes 20120524 ConCall.doc
- File:SPM Minutes 20120621 ConCall.docx
- File:SPM Minutes 20120705 ConCall.docx
- File:SPM Minutes 20120816 ConCall.docx
- File:SPM Minutes 20121018 ConCall.docx
- File:SPM Minutes 20121101 ConCall.docx
- File:SPM Minutes 20121115 ConCall.docx
- File:SPM Minutes 20121213 ConCall.docx
- File:SPM Minutes 20130110 ConCall.docx
- File:SPM Minutes 20130131 ConCall.docx
- File:SPM Minutes 20130214 ConCall.docx
- File:SPM Minutes 20130307 ConCall.docx
- File:SPM Minutes 20130314 ConCall.docx
- File:SPM Minutes 20130328 ConCall.docx
- File:SPM Minutes 20130605 ConCall.docx
- File:SPM Minutes 20130725 ConCall.docx
- File:SPM Minutes 20130808 ConCall.docx
- File:SPM Minutes 20130905 ConCall.docx
- File:SPM Minutes 20131003 ConCall.doc
- File:SPM Minutes 20131010 ConCall.doc
- File:SPM Minutes 20131024 ConCall.doc
- File:SPM Minutes 20131031 ConCall.doc
- File:SPM Minutes 20131107 ConCall.doc
- File:SPM Minutes 20131114 ConCall.doc
- File:SPM Minutes 20131121 ConCall.doc
- File:SPM Minutes 20131205 ConCall.doc
- File:SPM Minutes 20131219 ConCall.doc
- File:SPM Minutes 20140109 ConCall.docx
- File:SPM Minutes 20140130 ConCall.docx
- File:SPM Minutes 20140213 ConCall v2.docx
- File:SPM Minutes 20140227 ConCall.docx
- File:SPM Minutes 20140306 ConCall.docx
- File:SPM Minutes 20140313 ConCall.docx
- File:SPM Minutes 20140320 ConCall.docx
- File:SPM Minutes 20140327 ConCall.docx
- File:SPM Minutes 20140605 ConCall.docx
- File:SPM Minutes 20140619 ConCall.docx
- File:SPM Minutes 20140703 ConCall.docx
- File:SPM Minutes 20140731 ConCall.docx
- File:SPM Minutes 20140807 ConCall.docx
- File:SPM Minutes 20140821 ConCall.docx
- File:SPM Minutes 20140904 ConCall.docx
- File:SPM Minutes 20141016 ConCall.docx
Working Documents
Use Cases
- Clinical Sequencing Project - Identified Use Cases to Consider in Specimen CMET - from CG ClinSeq.doc
- Specimen Use Case for Isolate Representation
- Specimen Use Case for Environmental Specimen
- Medical Research Use Case and Specimen Core Diagram Media:Specimen-Core Model Diagram and Medical Research Use Case Process Flow.xls
- Origin of Specimen
- Need to indicate whether the specimen is human, animal, soil, etc.
- For viral genetics where DNA/RNA can be extracted from a micro-organism.
- Notes from May WGM
- II perspective mainly interested in specimen in context of interventional imaging
- An introduction to the DICOM specimen information model is available in DICOM Part 17 (available free at ftp://medical.nema.org/medical/dicom/2011/11_17pu.pdf) Annex NN.
- Detailed specimen information can be found in DICOM Part 3 (available free at ftp://medical.nema.org/medical/dicom/2011/11_03pu.pdf). This information that has been specified by DICOM WG26 "Pathology" (DICOM Supplement 122 "Specimen Identification and Revised Pathology" Project) should be taken into consideration in the project.
Status & Deliverables
Ballot Reconciliation Editing
Ballot spreadsheet for tracking work assignment - PLEASE do NOT filter on the google doc, as it affects the entire document, rather download and work in your local copy and then update the google spreadsheet afterwards: spreadsheet
Balloted document section: use cases File:V3 DAM SPECIMEN R1 I1 2014MAY UseCases.docx - Lori Dieterle
Balloted document section: Tables with definitions File:V3 DAM SPECIMEN R1 I1 2014MAY DefinitionTables.docx - Kathy Walsh
File:V3 DAM SPECIMEN R1 I1 2014MAY DefinitionTables section2.docx - Mark Jones
Section 3 - Riki Merrick - is covered in entire document file
Editor for entire document: [[1]] members only site Riki Merrick
Editor for Model: Lorraine Constable - file is here: [[2]]
Draft Model
Specimen Model in Gforge: http://gforge.hl7.org/gf/project/orders/scmsvn/?action=browse&path=%2Ftrunk%2FPOSP%2FDAM%2F
Definitions spreadsheet: File:Specimen DAM classes and attributes with notes.xlsx
- snapshot of Draft Model work in progress (draft model on the left, excerpts from NCI LSDAM on the right):
Links
LS DAM Wiki: https://wiki.nci.nih.gov/x/cxRlAQ
LS DAM Overview: https://wiki.nci.nih.gov/download/attachments/76677702/LSDAMSpecimenHL7OO.pptx
LS DAM (Enterprise Architect) : https://wiki.nci.nih.gov/download/attachments/23401587/LSDAMWorking.EAP
LS DAM (HTML): http://ncientarch.info/sandbox/LSDAM2_2_2/EARoot/EA3/EA1/EA1/EA1/EA1/EA1/EA4/EA157.htm