Difference between revisions of "Clarification on comments re Exon"
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| − | + | Lauren Becnel: Dystrophin exon 23, for example, is a better example than exon 58 because 23 is an exon that is translated to protein and important for some mouse models of the human disease. | |
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Revision as of 13:33, 25 February 2016
Return to BRIDG
Need clarification on comments re Exon (row 23)
Current Definitions
Exon
DEFINITION: A portion of a gene sequence that is transcribed into the final mRNA product.
EXAMPLE(S): Dystrophin exon 68
OTHER NAME(S):
NOTE(S): An image showing splicing may be a better example of this class.
NucleicAcidSequenceFeature.typeCode (inherited by Exon which is a subclass of NucleicAcidSequenceFeature)
DEFINITION: A coded value specifying the category of the nucleic acid sequence feature.
EXAMPLE(S): DNA methylation
OTHER NAME(S):
NOTE(S): [Glycosylation Site:C16643, C37901; Binding Site:C13671]
Ballot Comment
do you really want Dystrophin exon 68 within this field? It makes it an uncoded string
Current Disposition
Pending Input From Submitter
Proposed Disposition Comment
Need clarification and SME input - sounds like the example in BRIDG ("Dystrophin exon 68") is not really a typeCode (one of two inherited attributes, orientation is the other) and therefore causing confusion. If it's a name then is BRIDG missing an attribute?
Outstanding Questions
- What would be a more appropriate example for Exon?
- Do we need to change anything about the inherited typeCode attribute?
Responses
Lauren Becnel: Dystrophin exon 23, for example, is a better example than exon 58 because 23 is an exon that is translated to protein and important for some mouse models of the human disease.
UPDATE DONE IN THE MODEL
Return to BRIDG
