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In addition, Clinical Genomics will seek to assure that related or supportive standards produced by other HL7 groups are robust enough to accommodate their use in both research and clinical care use. The group will also monitor information interchange standards developed outside HL7, and attempt harmonization of information content and representation of such standards with the HL7 content and representation.
 
In addition, Clinical Genomics will seek to assure that related or supportive standards produced by other HL7 groups are robust enough to accommodate their use in both research and clinical care use. The group will also monitor information interchange standards developed outside HL7, and attempt harmonization of information content and representation of such standards with the HL7 content and representation.
  
====Formal Relationships with Other HL7 Groups====
+
===Formal Relationships with Other HL7 Groups===
 
This Work Group will coordinate with a large number of other Work Groups in order to accomplish its mission. Strongest relationships will be with:
 
This Work Group will coordinate with a large number of other Work Groups in order to accomplish its mission. Strongest relationships will be with:
 
* Orders and Observation
 
* Orders and Observation
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* Structured Documents
 
* Structured Documents
  
====Formal Relationships with Groups Outside of HL7====
+
===Formal Relationships with Groups Outside of HL7===
  
 
===Decision Making===
 
===Decision Making===
See Work Group Decision Making Documents[http://www.hl7.org/Special/Committees/decisionmaking.cfm] (''Date of Last Revision: Final March 2, 2009'')
+
See Work Group Decision Making Document:
 +
 
 +
http://www.hl7.org/Special/Committees/decisionmaking.cfm
 +
 
 +
''Date of Last Revision: Final March 2, 2009''
  
 
==Conference Calls, Agendas and Minutes==
 
==Conference Calls, Agendas and Minutes==
 
   
 
   
====Web and Teleconference(default)====
+
===WGM Agenda and Minutes===
The weekly calls are on on Tuesday's at 11 EST.
+
http://wiki.hl7.org/index.php?title=CG_Working_Group_Meeting_Minutes
Phone Number: +1 770-657-9270
+
 
Participant Passcode: 941378
+
===Web and Teleconference(default)===
 +
The weekly calls are on on Tuesday's at 11 US Eastern Time.
 +
 
 +
Minutes:
 +
https://docs.google.com/document/d/12-uBrMmav71a3_c9h_FXQteJo_I5Kt72NEBYXZuwhFg/edit
 +
 
 +
Join the online meeting (VoIP available with this):
 +
 
 +
Online Meeting Link:
 +
* https://join.freeconferencecall.com/hl7cgchairs
 +
Online Meeting ID:
 +
* hl7cgchairs
 +
 
 +
Dial into the conference:
 +
Dial-in Number: (563) 999-1048 - United States
  
WebEx meeting link for the Tuesday 11 AM EST call is https://intermountainmeetings.webex.com/intermountainmeetings/j.php?J=627819939.
+
Access Code: 201608
  
If the default WebEx link does not work, please try the following: https://www.lotuslive.com/join?schedid=1136358
+
International Dial-in Numbers: https://www.freeconferencecall.com/wall/hl7cgchairs/#international
  
 
===Current Conference Call Agendas and Minutes===
 
===Current Conference Call Agendas and Minutes===
Conference call agendas and minutes leading up to the next HL7 Work Group Meeting are kept on this page: [[CG_WG_Call_Notes_leading_to_2013_May_WGM|Conference Calls]].
+
Conference call agendas and minutes leading up to the next HL7 Work Group Meeting
 +
 
 +
May 2018 HL7 Working Group Meeting
 +
May 12, 2018 to May 18, 2018 - Maritim Hotel Köln, Cologne, Germany
 +
 +
[http://wiki.hl7.org/index.php?title=CG_WG_Call_Notes_leading_to_2018_May_WGM CG_WG_Call_Notes_leading_to_2018_May_WGM].
  
 
===Conference Call Archive===
 
===Conference Call Archive===
 
Conference call minutes are partitioned into separate pages chronologically by work group meeting.
 
Conference call minutes are partitioned into separate pages chronologically by work group meeting.
 +
http://wiki.hl7.org/index.php?title=CG_WG_Call_Notes_leading_to_2018_May_WGM
 +
*[[CG WG Call Notes leading to 2018 September WGM|2018 September]] - Baltimore, MD
 +
*[[CG WG Call Notes leading to 2018 May WGM|2018 May]] - Cologne, Germany
 +
*[[CG WG Call Notes leading to 2018 January WGM|2018 January]] - New Orleans, LA
 +
*[[CG WG Call Notes leading to 2017 September WGM|2017 September]] - San Diego, CA
 +
*[[CG WG Call Notes leading to 2017 May WGM|2017 May]] - Madrid, Spain
 +
*[[CG WG Call Notes leading to 2017 January WGM|2017 January]] - San Antonio, TX
 +
*[[CG WG Call Notes leading to 2016 September WGM|2016 September]] - Balitmore, MD
 +
*[[CG WG Call Notes leading to 2016 May WGM|2016 May]] - Montreal, Canada
 +
*[[CG WG Call Notes leading to 2016 January WGM|2016 January]] - Orlando, FL
 +
*[[CG WG Call Notes leading to 2015 September WGM|2015 September]] - Atlanta, GA
 +
*[[CG WG Call Notes leading to 2015 May WGM|2015 May]] - Paris, France
 +
*[[CG WG Call Notes leading to 2015 January WGM|2015 Jan]] - San Antonio, TX
 
*[[CG WG Call Notes leading to 2014 September WGM|2014 Sep]] - Chicago, MI
 
*[[CG WG Call Notes leading to 2014 September WGM|2014 Sep]] - Chicago, MI
 
*[[CG WG Call Notes leading to 2014 May WGM|2014 May]] - Phoenix, AZ
 
*[[CG WG Call Notes leading to 2014 May WGM|2014 May]] - Phoenix, AZ
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:Older conference call minutes have been uploaded to the clinical genomic document repository on the main HL7 site.
 
:Older conference call minutes have been uploaded to the clinical genomic document repository on the main HL7 site.
  
== CG Projects ==
+
==Active CG Projects ==
===[[Family History - Pedigree]]===
+
All active projects can be viewed here:
*[[Family Health History Overview]]
 
* Project: [[Family History-Pedigree Implementation Guide]]
 
  
===GTR - CDA Implementation Guide for Genetic Testing Report===
+
https://www.hl7.org/Special/committees/clingenomics/projects.cfm
[[The GTR home page]]
 
  
===Clinical Sequencing Domain Analysis Model Project aka [[ Clinical Sequencing Project]]===
+
[[CG Project Archive]]
Domain Analysis Model, focusing on the clinical sequencing use case, balloted in September 2014 as Informative. 
 
This material will be combined with the Clinical Genomics Domain Information Model and balloted together in January 2014 as the Clinical Genomics Domain Analysis and Information Models.
 
  
===[[Clinical Genomics Domain Information Model(s) Project]]===
+
== Current Clinical Genomic Standards ==
This project focuses on developing agreed-upon Clinical Genomics Domain Information Model(s) that are independent of any specific HL7 flavor of standards, and thus could serve as the source of semantics of all existing and future HL7 Clinical Genomics standards.
+
All active CG standards and products are here:
  
===Clinical Genomics FHIR Profile for Genetic Observation===
+
https://www.hl7.org/Special/committees/clingenomics/products.cfm
This work will extend the current FHIR Observation for support of reporting clinical genetic and genomic findings.
 
Ongoing project documentation on the [http://www.hl7.org/Special/committees/clingenomics/index.cfm]
 
  
== CG Standards ==
+
[[CG Standards Archive]]
====Family History Standards====
 
  
'''''Reaffirmation of HL7 V3 Standard: Clinical Genomics; Pedigree, R1'''''
+
==Group Roadmap==
:[http://www.hl7.org/implement/standards/product_brief.cfm?product_id=8|HL7 Version 3 Standard: Clinical Genomics; Pedigree, Release 1]
+
[[CG Roadmap]]
:Reaffirmation Ballot - 2012
 
:Normative Ballot 1 - May, 2007
 
  
'''''HL7 V3 IG: Canonical Pedigree (Family History) Interoperability, R1'''''
+
==Working Group Meetings==
:[http://www.hl7.org/implement/standards/product_brief.cfm?product_id=301|HL7 Version 3 Implementation Guide: Family History/Pedigree Interoperability, Release 1]
+
[[CG Working Group Meeting Agendas]]
 
 
====Clinical Genetic/Genomic Standards====
 
  
'''''HL7 IG for CDA R2: Genetic Testing Reports, Release 1 - GTR'''''
+
[[CG Working Group Meeting Minutes]]
:[http://www.hl7.org/implement/standards/product_brief.cfm?product_id=292\:HL7 Implementation Guide for CDA® Release 2: Genetic Testing Reports, Release 1]
 
 
 
'''''HL7 Version 2 Implementation Guide: Clinical Genomics; Fully LOINC-Qualified Genetic Variation Model, Release 2'''''
 
:[http://www.hl7.org/implement/standards/product_brief.cfm?product_id=23|HL7 Version 2 Implementation Guide: Clinical Genomics; Fully LOINC-Qualified Genetic Variation Model, Release 2 (US Realm)]
 
 
 
'''''HL7 Version 2 Implementation Guide: Clinical Genomics; fully LOINC-Qualified Cytogenetic Model, Release 1'''''
 
:[http://www.hl7.org/implement/standards/product_brief.cfm?product_id=364|HL7 Version 2 Implementation Guide: Clinical Genomics; fully LOINC-Qualified Cytogenetic Model, Release 1 (US Realm)]
 
 
 
==Working Group Meetings==
 
===[[CG Working Group Meeting Agendas]]===
 
===[[CG Working Group Meeting Minutes]]===
 
  
 
==Sub-Teams==
 
==Sub-Teams==
  
* [[CG Vocabulary]]
+
* FHIR
* [[Canonical Pedigree Project]]
+
https://docs.google.com/document/d/1FGCQRtxJKyHhnC1uB_t4sJZ9yXbLMGOqPXHPr5tSLLQ/edit#heading=h.zfi9l8jfe4la
 +
* Modeling
 +
https://docs.google.com/document/d/18sVxZdAeA98ok5hdGwmmVxVinTq_vAT9B-Z8GIAyRiM/edit
  
==Domains==
+
[[CG Subteam Archive]]
===Clinical Genomics===
 
====Clinical Genomics Facilitators====
 
Modeling:
 
Amnon Shabo
 
amnon.shvo@gmail.com
 
University of Haifa
 
 
 
Publishing:
 
Grant Wood
 
Grant.Wood@imail.org
 
Intermountain Healthcare
 
 
 
Vocabulary:
 
Past facilitators: Joyce Hernandez, Yan Heras
 
 
 
 
 
 
 
==Archived Standards==
 
 
 
'''''HL7 CG_GV, R1'''''
 
:HL7 Version 3 Standard: Genetic Variation, Release 1
 
:Last Ballot: Normative Ballot 2 - January 2009
 
 
 
'''''HL7 IG CG_GENO, R1'''''
 
:HL7 Version 3 Genotype, Release 1
 
:Last Ballot: DSTU Ballot 1 - January 2009
 
  
 
==Archived Work==
 
==Archived Work==
 
+
[[CG Other Archived Work]]
====Genotype Topic====
 
This approved DSTU spec has been deprecated and several portions of it are under normative ballot as CMETs (e.g., Genetic Variations CMET).
 
 
 
====Genetic Variation====
 
This component model (CMET) was under development as normative standard and passed ballot by the numbers but has not been published and the effort is frozen at this time.
 
 
 
====Gene Expression====
 
This component model (CMET) was under development in 2011 but the effort is frozen at this time.
 
 
 
====[[Models - Domain Information and Domain Analysis]]====
 
This specific work has rolled into other work group efforts.
 
 
 
==Reference Links==
 
'''BRIDG''' file release site
 
http://gforge.nci.nih.gov/frs/?group_id=342
 
 
 
'''BRIDG''' Project site
 
http://gforge.nci.nih.gov/projects/bridg-model/
 
 
 
  
 
[[Category:Work_Group]]
 
[[Category:Work_Group]]
 
[[Category:Structure_and_Semantic_Design_Steering_Division]]
 
[[Category:Structure_and_Semantic_Design_Steering_Division]]

Latest revision as of 14:02, 4 June 2018

Main Page | Clinical Genomics (CG)

This page is for the Clinical Genomics Work Group

Mission and Charter

Mission

This group supports the HL7 mission to create and promote its standards by enabling the communication between interested parties of the clinical and personalized genomic data. The focus of clinical genomics work is the personalization (differences in individual's genome) of the genomic data and the linking to relevant clinical information.

This Work Group will facilitate the development of common standards for clinical research information management across a variety of organizations -- including national and international government agencies and regulatory bodies, private research efforts, and sponsored research -- and thus the availability of safe and effective therapies by improving the processes and efficiencies associated with regulated clinical research.

Charter

Work Products and Contributions to HL7 Processes

The Work Group will collect, review, develop and document clinical genomics use cases in order to determine what data needs to be exchanged. The WG will review existing genomics standards formats such as BSML (Bioinformatics Sequence Markup Language), MAGE-ML (Microarray and Gene Expression Markup Language), LSID (Life Science Identifier) and other. This group will recommend enhancements to and/or extensions of HL7's normative standards for exchange of information about clinical genomic orders and observations.

In addition, Clinical Genomics will seek to assure that related or supportive standards produced by other HL7 groups are robust enough to accommodate their use in both research and clinical care use. The group will also monitor information interchange standards developed outside HL7, and attempt harmonization of information content and representation of such standards with the HL7 content and representation.

Formal Relationships with Other HL7 Groups

This Work Group will coordinate with a large number of other Work Groups in order to accomplish its mission. Strongest relationships will be with:

  • Orders and Observation
  • Anatomic Pathology
  • Image Integration
  • Clinical Statement
  • Clinical Decision Support
  • Patient Care
  • Electronic Health Records
  • Modeling and Methodology
  • Structured Documents

Formal Relationships with Groups Outside of HL7

Decision Making

See Work Group Decision Making Document:

http://www.hl7.org/Special/Committees/decisionmaking.cfm

Date of Last Revision: Final March 2, 2009

Conference Calls, Agendas and Minutes

WGM Agenda and Minutes

http://wiki.hl7.org/index.php?title=CG_Working_Group_Meeting_Minutes

Web and Teleconference(default)

The weekly calls are on on Tuesday's at 11 US Eastern Time.

Minutes: https://docs.google.com/document/d/12-uBrMmav71a3_c9h_FXQteJo_I5Kt72NEBYXZuwhFg/edit

Join the online meeting (VoIP available with this):

Online Meeting Link:

Online Meeting ID:

  • hl7cgchairs

Dial into the conference: Dial-in Number: (563) 999-1048 - United States

Access Code: 201608

International Dial-in Numbers: https://www.freeconferencecall.com/wall/hl7cgchairs/#international

Current Conference Call Agendas and Minutes

Conference call agendas and minutes leading up to the next HL7 Work Group Meeting

May 2018 HL7 Working Group Meeting May 12, 2018 to May 18, 2018 - Maritim Hotel Köln, Cologne, Germany

CG_WG_Call_Notes_leading_to_2018_May_WGM.

Conference Call Archive

Conference call minutes are partitioned into separate pages chronologically by work group meeting. http://wiki.hl7.org/index.php?title=CG_WG_Call_Notes_leading_to_2018_May_WGM

Older conference call minutes have been uploaded to the clinical genomic document repository on the main HL7 site.

Active CG Projects

All active projects can be viewed here:

https://www.hl7.org/Special/committees/clingenomics/projects.cfm

CG Project Archive

Current Clinical Genomic Standards

All active CG standards and products are here:

https://www.hl7.org/Special/committees/clingenomics/products.cfm

CG Standards Archive

Group Roadmap

CG Roadmap

Working Group Meetings

CG Working Group Meeting Agendas

CG Working Group Meeting Minutes

Sub-Teams

  • FHIR

https://docs.google.com/document/d/1FGCQRtxJKyHhnC1uB_t4sJZ9yXbLMGOqPXHPr5tSLLQ/edit#heading=h.zfi9l8jfe4la

  • Modeling

https://docs.google.com/document/d/18sVxZdAeA98ok5hdGwmmVxVinTq_vAT9B-Z8GIAyRiM/edit

CG Subteam Archive

Archived Work

CG Other Archived Work